PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G133000.1.p
Common NameGLYMA_20G133000, LOC100816269
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 172aa    MW: 18744.7 Da    PI: 8.0672
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G133000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26095.36.6e-302102196
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C+vlr++C++dC+l+ ++     p++q++++ +v+k+FG+++++++l+++p ++r+++++sl+yeA  r+ +Pv+Gavg+++++++
  Glyma.20G133000.1.p   2 SCNGCRVLRKGCSDDCMLRHCLvwienPQAQAHATLFVAKFFGRATLMSFLSSVPSNQRSALFQSLLYEAVGRTINPVNGAVGLLWTGNW 91 
                          6***************************************************************************************** PP

               DUF260  86 qleqlkaelal 96 
                          +l+q+ +e +l
  Glyma.20G133000.1.p  92 HLCQMGVEKVL 102
                          ****9887665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.4741107IPR004883Lateral organ boundaries, LOB
PfamPF031959.7E-27299IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSDDCMLR HCLVWIENPQ AQAHATLFVA KFFGRATLMS FLSSVPSNQR  60
SALFQSLLYE AVGRTINPVN GAVGLLWTGN WHLCQMGVEK VLRGGAALTP LPQVITSVER  120
VMVGGEIIMC HQPKKQHVGT PPEEESEIST FGSRPLDSAP QSQTNLLTLF F*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G133000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2351770.0AC235177.1 Glycine max strain Williams 82 clone GM_WBb0007H11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003555291.11e-125LOB domain-containing protein 38
RefseqXP_028219492.11e-125LOB domain-containing protein 38-like
SwissprotQ9FN113e-58LBD37_ARATH; LOB domain-containing protein 37
SwissprotQ9SN233e-58LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A445F4N41e-124A0A445F4N4_GLYSO; LOB domain-containing protein 37
TrEMBLI1NG191e-124I1NG19_SOYBN; Uncharacterized protein
STRINGGLYMA20G26910.11e-125(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.11e-60LOB domain-containing protein 37
Publications ? help Back to Top
  1. Menz J,Li Z,Schulze WX,Ludewig U
    Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition.
    Plant J., 2016. 88(5): p. 717-734
    [PMID:27419465]