PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G115700.1.p
Common NameGLYMA_20G115700, LOC100779034
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 225aa    MW: 24782.5 Da    PI: 8.8656
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G115700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26087.81.5e-2741081100
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C++lr++C+++C+++p++     p++q++++ +++k++G++ +l+l++a+p++  + +++sl+yeA+ r+ +P yG++g+++++++
  Glyma.20G115700.1.p   4 SCNGCRILRKGCNDNCIIRPCLewmnsPESQANATLFLAKFYGRTGLLNLITAAPQHLGPVVFRSLLYEACGRLVNPTYGSLGLFWTGEW 93 
                          6***************************************************************************************** PP

               DUF260  86 qleqlkaelallkee 100
                            ++++++++l++++
  Glyma.20G115700.1.p  94 AQCEAAVDAVLTGSK 108
                          *******99998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.6233109IPR004883Lateral organ boundaries, LOB
PfamPF031955.0E-224103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MKSSCNGCRI LRKGCNDNCI IRPCLEWMNS PESQANATLF LAKFYGRTGL LNLITAAPQH  60
LGPVVFRSLL YEACGRLVNP TYGSLGLFWT GEWAQCEAAV DAVLTGSKIN GVAPSDGHTS  120
GTLASDHILS TCDIRHMKNG TNVDDMRGRI QFKNVKQVIK PKPRMGSIDS TMLWKPNCQS  180
QSMETIEASL VSQDELNRVR KIKLDLELTL GFRCQSTNGK KTHY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G115700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003555233.11e-169LOB domain-containing protein 40
SwissprotQ9CA303e-57LBD42_ARATH; LOB domain-containing protein 42
TrEMBLI1NFI91e-168I1NFI9_SOYBN; Uncharacterized protein
STRINGGLYMA20G24950.11e-168(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14785614
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.11e-59LOB domain-containing protein 42