PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G050400.1.p
Common NameGLYMA_20G050400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 149aa    MW: 17173.8 Da    PI: 10.6038
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G050400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.72.3e-161152344
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                         i n ++r+ t+skR+ng++KK  E+S+LC++e++ i + +++
  Glyma.20G050400.1.p 11 ITNARKRKATLSKRKNGLIKKMDEISTLCGIEACAIFYTPNN 52
                         89************************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.792152IPR002100Transcription factor, MADS-box
SMARTSM004322.2E-20160IPR002100Transcription factor, MADS-box
CDDcd002666.88E-26282No hitNo description
PRINTSPR004041.8E-9323IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.19E-23395IPR002100Transcription factor, MADS-box
PfamPF003193.6E-161152IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MARKKVDLSY ITNARKRKAT LSKRKNGLIK KMDEISTLCG IEACAIFYTP NNPQPEVWPS  60
DSGAQSVLSR FRKVSELEQS KKKLSQESFL RQRINKAKKK EVTLLMFQNL NAKNNFENSN  120
MIDLNDVSNL INHNLEEVKR KINMSQAQE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217RKKVDLSYITNARKRK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the central cell of the female gametophyte and in early endosperm. Also detected in ovaries, young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:16798889}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G050400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028220242.11e-102agamous-like MADS-box protein AGL80
SwissprotQ9FJK35e-38AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A0R0E7431e-104A0A0R0E743_SOYBN; Uncharacterized protein (Fragment)
STRINGXP_007146077.16e-74(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-40AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]