PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G224700.1.p
Common NameGLYMA_19G224700, LOC102659557
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 634aa    MW: 68907.2 Da    PI: 6.0405
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G224700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.95.7e-16404450455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  Glyma.19G224700.1.p 404 VHNLSERRRRDRINEKMRALQELIPNC-----NKADKASMLDEAIEYLKTLQ 450
                          5*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.8E-20397459IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-20398462IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.171400449IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.01E-17403454No hitNo description
PfamPF000101.9E-13404450IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-17406455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 634 aa     Download sequence    Send to blast
MPLHELYRVA KGKLDPIEMN NNTCAVDQSS VPNNDLLELV WEKGQISVQG QFSRARVSPN  60
CKTLPSHCLP SHTPIGYANN AISTNTRMGK CGNLGVELNE IRRLVPSGEV DLSEEEEDMV  120
MPWFNYGMED SLQHGYSTDF FHEPSSYGVT MNELSASNNF SLLDRRNNCT KIFRDTHKHS  180
SYAPVRSSVA DIAENNANNV PSGSSGFSSL KMERQGPVMC SSSSTMMNFS HFAKPAAIVK  240
ANIENIGLAS RSGNEGIQIK SAAATVTNPA ESTKVELSGE CPKKPATHNQ DQDVTVSTKC  300
DPSCKDVSKV DQNQTSNLVV GESVNKGHEA VEKGVELAVV SSSVCSGNGP ERGSEDPNQN  360
LKRKSKDTED FESQSEDVEE ESVGVNKEVP ARRNGAKKSR SAEVHNLSER RRRDRINEKM  420
RALQELIPNC NKADKASMLD EAIEYLKTLQ LQLQIMSMGT SLCMPAMMLH PGMQHMHAPH  480
MGPFSPIGVG MQMRLGVGCG MGMPDANDIE SSRFIQVPQM QGTHHPSQGH PIPMPHAPIF  540
SFPGEPFINP STLGLVETVD KASSAFGLIK DQIPQLAQNT NNGCNSTNQM STVQCEATIG  600
GFEHSILVLN SGHATSVNDR GAINPSTEDN PYH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1408413ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2351800.0AC235180.1 Glycine max strain Williams 82 clone GM_WBb0008A05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006604779.10.0PREDICTED: transcription factor PIF3-like
TrEMBLK7MZQ40.0K7MZQ4_SOYBN; Uncharacterized protein
STRINGGLYMA19G41261.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25816128
FabidsOGEF52713353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-57phytochrome interacting factor 3