PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G222000.2.p
Common NameGLYMA_19G222000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 396aa    MW: 43825.7 Da    PI: 9.8752
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G222000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.71.2e-14217262454
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           hn  E++RR++iN+++ +L++l+P++      K++Ka++L  A++Y+k L
  Glyma.19G222000.2.p 217 VHNLSEKKRREKINKKMRTLKDLIPNC-----NKVDKASMLDDAIDYLKTL 262
                          5*************************8.....6****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.9E-17210269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.32E-15211267No hitNo description
SuperFamilySSF474592.09E-18211272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.682213262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-12217262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-16219268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MAKIRVNPPK ARIPASFMKN LQTYLSPLPQ AIVTYNSAYL HLRSRNKEPI QPKHQDQQNA  60
TQQTKNHSSP ARVEEIEALK VDKSAKETQC FQKQTSLTVE RSTKLPTPAV DEHSEAAGHN  120
CGVLGIHRSQ GQTSTSEALR AKAKAYNNNN INMCHEPLLA SSSVCSLGAS NDPNLGFRKH  180
EDTDDSTYLS DNDGEPEDMV KQDREGNRVK RSRNPEVHNL SEKKRREKIN KKMRTLKDLI  240
PNCNKVDKAS MLDDAIDYLK TLKLQLQANF QIMSMGSGLW PLMMGFRPPQ LPIPPLSAIT  300
DNRLIQMFGS PNQIPPMPMP HAPFFPIIGN SATQSHLANN TTTTAAATTN LAEHLANSLH  360
GNATKLAPPS QISFQHHHTS TSTPTLATPF IFPQK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1222227KKRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.17730.0cotyledon| leaf| meristem| seed coat
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311290.0KT031129.1 Glycine max clone HN_CCL_180 bHLH transcription factor (Glyma19g40980.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003553685.10.0PREDICTED: transcription factor PIF3-like
TrEMBLA0A0R0F1N20.0A0A0R0F1N2_SOYBN; Uncharacterized protein
STRINGGLYMA19G40980.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.21e-28phytochrome interacting factor 3