PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G216700.1.p
Common NameGLYMA_19G216700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 575aa    MW: 65538.2 Da    PI: 6.0589
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G216700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS268.32.6e-821965642374
                 GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsP 89 
                           + Ll++Ae v  +++e+a+ lL + +  ++ +++p+qR++++f++AL++r+++++ ++  + + ++++++     ++  alk  +   P
  Glyma.19G216700.1.p 196 AQFLLAAAERVGCQQFERANGLLLHCEWSSNASANPVQRVIFHFARALRERIYKETGRMTVKGSGKNEERELlqKMDTNIALKC-HLKVP 284
                          678***************************************************665555444444444333333333333344.4457* PP

                 GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                          + ++ ++t  qaI+e v+ e+++H iD++i  G+Q+ aL+qaLa+R+ +    l+iT++g ++   k+++eetg+rLa+fAe+l++pf++
  Glyma.19G216700.1.p 285 FNQVMQFTGIQAIVEHVACETKIHLIDLEIRSGVQYTALMQALAERRdRIVQLLKITAIGLSS--LKTMIEETGKRLASFAESLNLPFSY 372
                          ********************************************999455679********55..99*********************** PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                          +++ ++++++++ +++++ ++Ea+aV + + l ++++++ ++e+    +++++++++P +++v e ea+hns+sF++rf+eal +ysa f
  Glyma.19G216700.1.p 373 KTVFVTDIAEIREDHFEIGEDEAVAVYSPYFLRSMVSRPDCMEN----LMRVIRNIKPVIMIVLEVEANHNSPSFVNRFIEALFFYSAYF 458
                          ***********************************988888888....****************************************** PP

                 GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgs 357
                          d+le+ + +e e r+++E++ l++ i+++va+eg+er+ r+ +   Wr+ + +  + +  +se+    a+l+ + ++ ++  ++e++ ++
  Glyma.19G216700.1.p 459 DCLETCIKHEIECRMTIEAV-LSEGIRDIVAMEGRERTVRNVKIDVWRRFFARYRMVETGFSESSLYHAHLVAKGFSfGKFCTIEKNGKC 547
                          *******************9.********************************************************888789******* PP

                 GRAS 358 lvlgWkdrpLvsvSaWr 374
                          l+ gWk+ p+ s+SaWr
  Glyma.19G216700.1.p 548 LIVGWKGTPMHSISAWR 564
                          ****************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.738169543IPR005202Transcription factor GRAS
PfamPF035149.0E-80196564IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MEIDQFSSTD LNFKGTQMGY GSTQEDVFQG KESLSGMELL GEIDPLPAEN GKGVKLFKYQ  60
DQKQLQEPKA DNLMLEEVNF DPDETEGLMK HGVASTEPVE YNKQVAPTPS LASLELLRNY  120
GSRFKRLSEQ NISTLSNIET SFDRQKMSTE EIIRVAGARY IQYSAHWNDS FYIPMHPYGL  180
DLGGLSEEEN RDIELAQFLL AAAERVGCQQ FERANGLLLH CEWSSNASAN PVQRVIFHFA  240
RALRERIYKE TGRMTVKGSG KNEERELLQK MDTNIALKCH LKVPFNQVMQ FTGIQAIVEH  300
VACETKIHLI DLEIRSGVQY TALMQALAER RDRIVQLLKI TAIGLSSLKT MIEETGKRLA  360
SFAESLNLPF SYKTVFVTDI AEIREDHFEI GEDEAVAVYS PYFLRSMVSR PDCMENLMRV  420
IRNIKPVIMI VLEVEANHNS PSFVNRFIEA LFFYSAYFDC LETCIKHEIE CRMTIEAVLS  480
EGIRDIVAME GRERTVRNVK IDVWRRFFAR YRMVETGFSE SSLYHAHLVA KGFSFGKFCT  540
IEKNGKCLIV GWKGTPMHSI SAWRPILILF PKLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-2822456432375GRAS family transcription factor containing p
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003520753.30.0PREDICTED: DELLA protein RGL1-like isoform X1
TrEMBLA0A0R0F2C20.0A0A0R0F2C2_SOYBN; Uncharacterized protein
STRINGGLYMA19G40440.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP2520734
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.12e-51RGA-like 1