PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G208900.1.p
Common NameGLYMA_19G208900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 536aa    MW: 58395.9 Da    PI: 7.8253
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G208900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-0585107123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++C+k F r  nL+ H r H
  Glyma.19G208900.1.p  85 FVCEICNKGFQRDQNLQLHRRGH 107
                          89*******************88 PP

2zf-C2H216.13.1e-05161183123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC +C+k++  +s+ k H++t+
  Glyma.19G208900.1.p 161 WKCDKCSKRYAVQSDWKAHQKTC 183
                          58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.7E-884107No hitNo description
Gene3DG3DSA:3.30.160.601.8E-584107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121718.6E-585107IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.94985107IPR007087Zinc finger, C2H2
SMARTSM003550.01785107IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
SMARTSM0035575126156IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.9E-6149182IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.7E-8156182No hitNo description
SMARTSM0035589161181IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MSNISGDEGS FSSGNNGEEV HQESQQQHLQ SQLHDSSSGP SGACNSNASS NQQQTKKKRN  60
LPGTPDPNAE VVALSPTTLM ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLRQRTSTE  120
VKKRVYVCPE PSCVHHNPAR ALGDLTGIKK HYSRKHGEKK WKCDKCSKRY AVQSDWKAHQ  180
KTCGTREYKC DCGTIFSRRD SFITHRAFCD ALTEENNRVN NQGLTSGMPP NLQSQIPDLM  240
STMPLTTSPN TASKFGEYDP KNPLKSLAQE LVPIPFKFMS MGGGMFSTNA GALFGGPKTM  300
SPSSSSLQLG SSTSSSFNYL QDSENGGLIA ASAQMSATAL LQKAAQMGAT ASNSINSPMM  360
QKGFVSGTTT GPDHVSSTTR PPYSGAMLQH NNSYDHFSPQ PDLSSMAEVS GGGAFINQLF  420
HKGQEISQVF DTNNPGSAMN DVGMFGQMPM GRDHHNQGLM KSVEQEVSNS SSLMHGRDVN  480
DGNHPMQPST RFGGSDMTTV HDFLGIGGST SRVMNHFHHH FPHEDSTIEE PMWDV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-34157221367Zinc finger protein JACKDAW
5b3h_F2e-34157221367Zinc finger protein JACKDAW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Observed in vegetative tissues. Mainly expressed in hypocotyls, petioles, shoot apices, root tips, and trichomes, and, at low levels, in leaves, stems and flowers. {ECO:0000269|PubMed:25035403}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G208900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2353490.0AC235349.1 Glycine max strain Williams 82 clone GM_WBb0092H01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028217517.10.0zinc finger protein GAI-ASSOCIATED FACTOR 1-like
SwissprotQ9SCQ61e-114IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A445FJL20.0A0A445FJL2_GLYSO; Protein indeterminate-domain 2
TrEMBLK7MZH60.0K7MZH6_SOYBN; Uncharacterized protein
STRINGGLYMA19G39640.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21923085
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-112indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]