PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G118000.1.p
Common NameGLYMA_19G118000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Dof
Protein Properties Length: 484aa    MW: 52837.5 Da    PI: 7.7285
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G118000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof126.67.6e-40102161261
               zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                          ++k+l+cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvP+G+grrknk+ 
  Glyma.19G118000.1.p 102 PDKILQCPRCNSMDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPIGAGRRKNKHL 161
                          7899******************************************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074787.0E-3090159IPR003851Zinc finger, Dof-type
PfamPF027012.0E-32104160IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.5106160IPR003851Zinc finger, Dof-type
PROSITE patternPS013610108144IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MSQKEKGPGI RLFGRKIPVP ECQIPANSGP TDTCCSIKKT ELKIPSECGE NSEQQENSSD  60
SRDSKQESQH KVQENEPIVN PKPVEDNMET GSSDQDKVLK KPDKILQCPR CNSMDTKFCY  120
FNNYNVNQPR HFCKNCQRYW TAGGTMRNVP IGAGRRKNKH LASQYQHIIV TSDGIPASRL  180
ETTDSSGLQQ QHIASLESSV SFRSSADNCT MLKFGTDTPL CKSMDSMLNL RDQRRCADAS  240
SISCVEYRGE PSLCGSSVMT NGAQGNELSE HNTSNWLQCY PVPPWVLPYP GWNNVNSMEA  300
VHRSSAPMCN PYNNTGPTAM QWCPTPMVAI PGMCPPSIPL QFVPPSYWSG TPLWNAGTGA  360
VSIGSNACLS PTSSTNNSCC SGNGSPTLGK HTRDTVCTDE EKSEKCVLVP KTIRIDAPNE  420
ASKSPIIRAT LAIKLDKQQF VSNGDILKKI EPKEGKDRVL GASQILEANP AAISRAHAFQ  480
ESL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G118000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0939660.0BT093966.1 Soybean clone JCVI-FLGm-18A13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304603.20.0zf-Dof domain-containing protein
TrEMBLK7MXY40.0K7MXY4_SOYBN; Uncharacterized protein
STRINGGLYMA19G29610.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35023165
Representative plantOGRP3817445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.26e-60cycling DOF factor 2