PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G102000.1.p
Common NameGLYMA_19G102000, ICE2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 427aa    MW: 46617.9 Da    PI: 6.3281
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G102000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.11.1e-11240282754
                          HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A++Y+k+L
  Glyma.19G102000.1.p 240 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 282
                          79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.682233282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-17236303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-9239282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-14239288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.9E-16240295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.44E-12240286No hitNo description
CDDcd048731.60E-6355396No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MNMERYTLPA PPNIIPEEEE NIAIAMGAPL IPSFKSMLQQ HPQQLDSYFN SSISSTTIPF  60
VPNMDSFLSL DPFSPSFFNN SSSSSNMALD PGFDLGLDTG LHSSAPAPHL FSQAQMMGFE  120
FSELEALAGP GNVNVPFADG AKAAALLRSP HFEPPQQQPT LYRKRRGTAA EIPGLEMVRR  180
KGRKWQEGGG EGEEGSSADV GGSGLNYESD EQNESNGLKL SENGGDNKGK KKGLPAKNLM  240
AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIDYLK ELLQRINDLH HELESTPPGS  300
SLTPSSSTSF QPLTPTLPTL PCRVKEELYP GTLPSPKNQA AKVEVRVREG RTVNIHMFCT  360
RRPGLLLSTM KALDNLGLDV QQAVISCFNG FALDVFKAEQ CREGQDVLPE QIKAVLSDSA  420
GFHGMM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1229247KKKGLPAKNLMAERRRRKK
2241248ERRRRKKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.70250.0cotyledon| hypocotyl| root| somatic embryo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ3932240.0FJ393224.1 Glycine max inducer of CBF expression 2 (ICE2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001238577.10.0inducer of CBF expression 2
SwissprotQ9LSE21e-117ICE1_ARATH; Transcription factor ICE1
TrEMBLB8XJY60.0B8XJY6_SOYBN; Inducer of CBF expression 2
STRINGGLYMA19G27483.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5571678
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.44e-98bHLH family protein