PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G095300.1.p
Common NameGLYMA_19G095300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 331aa    MW: 35321.1 Da    PI: 9.4942
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G095300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP116.72.9e-3666156289
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg... 88 
                          a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tgt++++as+  a+ +s s + ss +   
  Glyma.19G095300.1.p  66 APKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAGNSLSPQGSSLSsal 155
                          789******************************************************************888444444444433333122 PP

                  TCP  89 k 89 
                          +
  Glyma.19G095300.1.p 156 H 156
                          0 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.6E-3271178IPR005333Transcription factor, TCP
PROSITE profilePS5136928.01672126IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MDPKGSKQQQ PQEVVPKFLS LPQHHYQQQG NSNNNNMGEN KPSEVKDFQI VVAAEKDESK  60
KQQQLAPKRS SNKDRHTKVE GRGRRIRMPA LCAARIFQLT RELGHKSDGE TIQWLLQQAE  120
PSIIAATGTG TIPASALAAA GNSLSPQGSS LSSALHHQHQ KIDELGCGSG GSSRASWQMV  180
GGNLGRPHLG VATTGLWPPH VSGFGFQTAT TTTTTTSSGP SNATLATESS NYLQKIAFPG  240
FDLPTSATNM GHMSFTSILG GAGSQQMPGL ELGLSQDGHI GVLNPQALNQ IYQQMNHQAQ  300
AGRVHQQHQH QQQQHQQTPA KDDSQGSGGQ *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.335310.0cotyledon| epicotyl| hypocotyl| leaf| root| seed coat| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00636PBM25215497Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G095300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2350440.0AC235044.1 Glycine max strain Williams 82 clone GM_WBb0005G15, complete sequence.
GenBankAC2352650.0AC235265.1 Glycine max strain Williams 82 clone GM_WBb0041K04, complete sequence.
GenBankAC2362960.0AC236296.1 Glycine max strain Williams 82 clone GM_WBb0094F23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304347.20.0transcription factor TCP20-like
RefseqXP_028218369.10.0transcription factor TCP20-like
SwissprotQ9LSD55e-82TCP20_ARATH; Transcription factor TCP20
TrEMBLA0A445FED10.0A0A445FED1_GLYSO; Transcription factor TCP20
TrEMBLI1N7U70.0I1N7U7_SOYBN; Uncharacterized protein
STRINGGLYMA19G26560.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33393269
Representative plantOGRP9221459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27010.16e-77TCP family protein
Publications ? help Back to Top
  1. Zhu P, et al.
    Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972
    [PMID:27708161]
  2. Wu JF, et al.
    LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
    Nat Commun, 2016. 7: p. 13181
    [PMID:27734958]
  3. Guan P, et al.
    Interacting TCP and NLP transcription factors control plant responses to nitrate availability.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424
    [PMID:28202720]
  4. Guan P
    Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 1697
    [PMID:29033968]
  5. Zhang N, et al.
    MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis.
    Plant J., 2018. 93(1): p. 66-78
    [PMID:29086441]
  6. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]
  7. Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K
    Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis.
    Microbes Environ., 2017. 32(4): p. 314-323
    [PMID:29187692]