PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G046300.1.p
Common NameGLYMA_19G046300, LOC100786490
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 294aa    MW: 31811.1 Da    PI: 7.4071
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G046300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26098.66.1e-314106198
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C+vlr++C++dC ++p++     p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++
  Glyma.19G046300.1.p   4 SCNGCRVLRKGCSEDCSIRPCLqwiknPESQANATVFLAKFYGRAGLMNLINAGPESLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSW 93 
                          6***************************************************************************************** PP

               DUF260  86 qleqlkaelallk 98 
                          ql+q+++e+ l +
  Glyma.19G046300.1.p  94 QLCQAAVEAILKG 106
                          ******9987766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381552.4E-961292IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089117.0593109IPR004883Lateral organ boundaries, LOB
PfamPF031956.3E-254102IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSEDCS IRPCLQWIKN PESQANATVF LAKFYGRAGL MNLINAGPES  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAILKGEPIT PITSEAAANG  120
RAPPLKAYDI RHVSKDENSA NETPKAKTRS RFNRTGSTLI KPKASKGTPT GFVPIEPVEP  180
ETANRTTSHE SGLSHLSEAA VMVEGESKES ESDVSVETSN LFHEEPESVA KTSDRTGESG  240
NEIGLELTLG FEPVSRVHHV VPMKKRKIIA SKSYGDSAEK DSCKMELGLE YPA*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G046300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003555129.10.0LOB domain-containing protein 41
SwissprotQ9M8861e-110LBD41_ARATH; LOB domain-containing protein 41
TrEMBLI1N6Q10.0I1N6Q1_SOYBN; Uncharacterized protein
STRINGGLYMA19G06280.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-103LOB domain-containing protein 41