PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G045900.1.p
Common NameGLYMA_19G045900, LOC106797420
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 357aa    MW: 40393.4 Da    PI: 6.3986
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G045900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.22.1e-13949141
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                         k i+n++ r  tf  Rr+ ++KK +E S+LC++e+++i++ 
  Glyma.19G045900.1.p  9 KLISNERSRRLTFKSRREILIKKTSEFSTLCGVEACLIVYD 49
                         569************************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.329152IPR002100Transcription factor, MADS-box
SMARTSM004328.7E-12162IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-16178IPR002100Transcription factor, MADS-box
CDDcd002661.29E-18277No hitNo description
PRINTSPR004041.4E-6323IPR002100Transcription factor, MADS-box
PfamPF003199.4E-141150IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-62338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-63859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MGRARITLKL ISNERSRRLT FKSRREILIK KTSEFSTLCG VEACLIVYDN GNGDVAPVTW  60
PKEPVLVHPI LQKYESQKNE RPPKTFGIED FLENRKNMVE ADISKVHKQI SNIKYPTWDP  120
SFTNMEEKQL KAFITQVNAK IMACDHVLQN KHQSKANNIM QNMAWGSASS SHIPSQITPT  180
PNNNGRVYVT NPINQFDGAS NHGMNMQQVD ACYGYIPTMA QESTNSTSSY PRQFNCLQNI  240
PQSQPIFEDL KPLDYKNEMV DFSYQVDVPL DSTNQLGVYA DWTNNQFGDF EDWINRPIDG  300
SNQPVNGDLV GLDNKPNESI LQNIPVQYQN KQQGGALHVL PPPLNGFQTD CYNVNF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G045900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014627212.10.0uncharacterized protein LOC106797420
RefseqXP_028216134.10.0uncharacterized protein LOC114398173
TrEMBLA0A445FCA20.0A0A445FCA2_GLYSO; Agamous-like MADS-box protein AGL82
TrEMBLK7MWJ80.0K7MWJ8_SOYBN; Uncharacterized protein
STRINGGLYMA19G06145.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53431111
Representative plantOGRP3677621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.14e-23M-type_MADS family protein