PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.19G030900.1.p
Common NameGLYMA_19G0309001, LOC100803100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 375aa    MW: 41358 Da    PI: 8.079
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.19G030900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP100.14.1e-31511802109
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.........eaesssssa 82 
                           g+kdrhsk++T +g+RdRRvRls+++a+ ++dLqd+LG+ ++sk ++WLl++ak++i+el+ ++ ++ +++         +++s s ++
  Glyma.19G030900.1.p  51 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIHLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLPIPPGNFTlgypslvscNEVSTSREG 140
                          689*************************************************************88888666654433311333333333 PP

                  TCP  83 snsssg..........................kaaksaakskksqksaasaln 109
                          s    g                          +        + ++++++ ++n
  Glyma.19G030900.1.p 141 S----GqntllwkpkpgeimvsdhdkanwmnrR--------EGDDDDDN-NHN 180
                          3....1235577777777777654322222210........22222222.122 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136930.54853111IPR017887Transcription factor TCP subgroup
PfamPF036341.4E-2853183IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MINSTKETDF PLKQEGLSSS DHEKAKAPSS SSSSQWLKLK DPRIVRVSRA FGGKDRHSKV  60
CTIRGLRDRR VRLSVPTAIH LYDLQDRLGL NQPSKVVDWL LNAAKHEIDE LPPLPIPPGN  120
FTLGYPSLVS CNEVSTSREG SGQNTLLWKP KPGEIMVSDH DKANWMNRRE GDDDDDNNHN  180
NSNGDKQGSN NNCHGGALVL PNNLLPTRPN HPSFLGLMNT MPSLGYQWEP NSSAADVNVQ  240
WQNHGFFNQT DVHSIDVVPF PSTLALSTGN STSTTTTSQI LVCPPPPGAT TQPYFPSSHF  300
ATMEMNARQI NHYQMLSSSS HQNLLANSLN HPSSQQLMSQ SGKAPFSLRI RPKLFHSPNS  360
SESHSQKDQD FPSK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A8e-1858112155Putative transcription factor PCF6
5zkt_B8e-1858112155Putative transcription factor PCF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.250050.0flower| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.19G030900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-143AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003554917.10.0transcription factor TCP13
RefseqXP_006603910.10.0transcription factor TCP13
RefseqXP_006603911.10.0transcription factor TCP13
RefseqXP_028216036.10.0transcription factor TCP13-like
RefseqXP_028216037.10.0transcription factor TCP13-like
RefseqXP_028216038.10.0transcription factor TCP13-like
TrEMBLA0A0B2SWD70.0A0A0B2SWD7_GLYSO; Transcription factor TCP13
TrEMBLK7MW900.0K7MW90_SOYBN; Uncharacterized protein
STRINGGLYMA19G03786.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.11e-38plastid transcription factor 1