PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G297100.1.p
Common NameGLYMA_18G297100, LOC100807854
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 302aa    MW: 32731 Da    PI: 8.2627
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G297100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26099.43.4e-314107199
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++
  Glyma.18G297100.1.p   4 SCNGCRVLRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLVNAGPEHLRPAIFRSLLYEACGRILNPIYGSVGLLWSGSW 93 
                          6***************************************************************************************** PP

               DUF260  86 qleqlkaelallke 99 
                          ql+q+++e +l ++
  Glyma.18G297100.1.p  94 QLCQAAVENVLKGA 107
                          ******99988765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381552.9E-991301IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089116.9273109IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-244102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLVNAGPEH  60
LRPAIFRSLL YEACGRILNP IYGSVGLLWS GSWQLCQAAV ENVLKGAPIT PITSEAAASG  120
RGPPLKAYDI RHVSKDENSA AASNETQHQR VKTRSRVKRP LANNNAKPKS TTNENNNNKG  180
TELGSAEPSL VACEWTEEVM NRSGSHDSTL SHQSEAANAV ESESMLSAET PETSILFREE  240
PETNPKRVSD DVGLELTLGF EPVSRARPVV PVKKRRIELK NFSGSAESGS CKMELGLECS  300
A*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.340510.0cotyledon| pod| somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G297100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003552728.10.0LOB domain-containing protein 41
RefseqXP_028215353.10.0LOB domain-containing protein 41-like
SwissprotQ9M8861e-106LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A445FZG70.0A0A445FZG7_GLYSO; LOB domain-containing protein 41
TrEMBLI1N5C20.0I1N5C2_SOYBN; Uncharacterized protein
STRINGGLYMA18G53440.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.14e-97LOB domain-containing protein 41