PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G289700.1.p
Common NameGLYMA_18G289700, LOC102662809
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Dof
Protein Properties Length: 364aa    MW: 39180.1 Da    PI: 10.1892
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G289700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.46.5e-3875134261
               zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                          ++++lkcprC+stntkfCyynnyslsqPr+fCk+CrryWt+GGalr vPvGgg+r+nk++
  Glyma.18G289700.1.p  75 PDASLKCPRCESTNTKFCYYNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRN 134
                          67899****************************************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-2959124IPR003851Zinc finger, Dof-type
PfamPF027011.9E-3277133IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.38579133IPR003851Zinc finger, Dof-type
PROSITE patternPS01361081117IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MVFPSLPIYL DPPNWSQQQP NQLARIGTQN PQIPLPPQRP PPSSVAAAIG NGGYQGSIRP  60
GSMADRARMA KIHQPDASLK CPRCESTNTK FCYYNNYSLS QPRHFCKTCR RYWTRGGALR  120
SVPVGGGCRR NKRNKGNSAR SKSPMKPSTG STSASANSSS SGCTPDHVMM THLPTPTPAH  180
QFPFLASLHH YNSDYASGGI GSHLGAITTP LVARNGNTTS DVEFQIGTSS ASSLGNSGGG  240
AMLSNNGLGE QLRFNNLQQV QHQFPFFSTN LEPQLGVFQF GGGENNNVEP PNYAKNGGRF  300
DIRSKMDSIS SVSGTLPQLN TIKLEENQGL SLPKNLLMTS REMVYLNGSS AMHGVKFLVS  360
LLH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G289700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006603038.10.0dof zinc finger protein DOF2.4
TrEMBLK7MVD40.0K7MVD4_SOYBN; Uncharacterized protein
STRINGGLYMA18G52661.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65634143
Representative plantOGRP3817445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37590.11e-38DNA binding with one finger 2.4