PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G244600.1.p
Common NameGLYMA_18G244600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 710aa    MW: 77512.6 Da    PI: 6.6383
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G244600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.21.1e-14369420155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Glyma.18G244600.1.p 369 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 420
                          57****************988532...5************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.26269334IPR001471AP2/ERF domain
SMARTSM003802.6E-8269340IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-9298336IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.1E-9302335IPR001471AP2/ERF domain
CDDcd000187.54E-12302336No hitNo description
SuperFamilySSF541719.15E-18369430IPR016177DNA-binding domain
CDDcd000183.17E-25369430No hitNo description
PfamPF008473.7E-10369420IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-18370429IPR001471AP2/ERF domain
PROSITE profilePS5103219.058370428IPR001471AP2/ERF domain
SMARTSM003807.0E-34370434IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    Send to blast
MGSMNLLGFS LSPQEHPSSQ DHSQTAPSRF CFNPDGISST DVAGDCFDLT SDSTPHLLNL  60
PSYGIYEAFH RSNNIHTTQD WKENYNSQNL LLGTSCSNQN MNHNHQQQQQ QQPKLENFLG  120
GHSFGEHEQP YGGNSASTEY MFPAQPVLAG GGGGGSNSSN TSNSSSIGLS MIKTWLRNQP  180
PHSENNNNNN NESGGNSRSS VQQTLSLSMS TGSQSSTSLP LLTASVDNGE SSSDNKQPHT  240
TAALDTTQTG AIETAPRKSI DTFGQRTSIY RGVTSIILTW CSSSQHSLYG VMAFFNKHCL  300
AVYLGGYDKE EKAARAYDLA ALKYWGTTTT TNFPISHYEK ELEEMKHMTR QEYVASLRRK  360
SSGFSRGASI YRGVTRHHQH GRWQARIGRV AGNKDLYLGT FSTQEEAAEA YDVAAIKFRG  420
LSAVTNFDMS RYDVKSILES TTLPIGGAAK RLKDMEQVEL RVENVHRADQ EDHSSIMNSH  480
LTQGIINNYA AGGTTATHHH NWHNALAFHQ PQPCTTIHYP YGQRINWCKQ EQDNSDASHS  540
LSYSDIHQLQ LGNNGTHNFF HTNSGLHPML SMDSASIDNS SSSNSVVYDG YGGGGGYNVI  600
PMGTTTTVVA NDGDQNPRSN HGFGDNEIKA LGYESVYGST TDPYHAHARN LYYLTQQQPS  660
SVDAVKASAY DQGSACNTWV PTAIPTHAPR SSTSMALCHG ATPFSLLHE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.278260.0somatic embryo| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in embryo throughout embryogenesis. Also present in free nuclear endosperm, but disappears once endosperm cellularization begins. {ECO:0000269|PubMed:12172019}.
UniprotTISSUE SPECIFICITY: Mostly expressed in developing seeds. {ECO:0000269|PubMed:12172019}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G244600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM7758560.0HM775856.1 Glycine max babyboom 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003552462.10.0AP2-like ethylene-responsive transcription factor BBM1
SwissprotQ8LSN21e-120BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A0R0F3L30.0A0A0R0F3L3_SOYBN; Uncharacterized protein
STRINGGLYMA18G47980.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81862840
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-104AP2 family protein