PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G221000.1.p
Common NameGLYMA_18G221000, LOC100777737
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 235aa    MW: 24428.6 Da    PI: 8.1512
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G221000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.45.7e-39171171100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r d++ +++yeA+ r+rdPvyG+v++i++lqqql +
  Glyma.18G221000.1.p  17 PCGACKFLRRKCVSGCIFAPYFDSEQgTSHFAAVHKVFGASNVSKLLLSIPVHRRLDTVITICYEAQSRIRDPVYGCVAHIFALQQQLVS 106
                          7***********************9989************************************************************** PP

               DUF260  90 lkaelallkee 100
                          l+ael++l+ +
  Glyma.18G221000.1.p 107 LQAELSYLHGH 117
                          ******99865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.45116118IPR004883Lateral organ boundaries, LOB
PfamPF031954.3E-3817114IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MSSGNGGGGS SSGTGSPCGA CKFLRRKCVS GCIFAPYFDS EQGTSHFAAV HKVFGASNVS  60
KLLLSIPVHR RLDTVITICY EAQSRIRDPV YGCVAHIFAL QQQLVSLQAE LSYLHGHLAQ  120
MELPQPSPPP PPPQTTAAPP SGFSIADLPP ATVAAVPATT YDLSSLFDPL GQTSWAMQQR  180
AIDLRQYLAA AAAPSTTSGA DIQAVARDIP HRHGSPPSPP ASSSNASPSL SHSK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003552342.11e-169PREDICTED: LOB domain-containing protein 18-like
SwissprotO221312e-73LBD18_ARATH; LOB domain-containing protein 18
TrEMBLI1N3F11e-169I1N3F1_SOYBN; Uncharacterized protein
STRINGGLYMA18G45320.11e-169(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP40515100
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00220.15e-66LBD family protein