PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G204700.1.p
Common NameGLYMA_18G204700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 177aa    MW: 19517.8 Da    PI: 7.3454
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G204700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH291.9e-095393954
                         HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH  9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                          r RR+ri ++f  L++++P        K++ +++Le A++Y+k L
  Glyma.18G204700.1.p 53 ARERRHRISDRFKILQSMVPGG-----SKMDTVSMLEGAIHYVKFL 93
                         699*****************95.....5****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.7864493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-1349108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-115097IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.59E-125097No hitNo description
SMARTSM003531.2E-115099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.3E-75393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MECISNPTPC EGSSSSSKHS NKSNKEKKGV RKSNKGGGGG GVRLSTDPQS VAARERRHRI  60
SDRFKILQSM VPGGSKMDTV SMLEGAIHYV KFLKTQILLH QALIDFVDVD HHESPLFLPS  120
EYNNFPDEHS ISLQQNPSSS VSVHSHHNQQ SLPQLPLAQC YFQGEEDFNT FDAMPL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007140229.13e-75hypothetical protein PHAVU_008G095100g
TrEMBLI1KG081e-129I1KG08_SOYBN; Uncharacterized protein
STRINGGLYMA0732S00200.11e-129(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP89411014
FabidsOGEF71672846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.13e-29APRATAXIN-like