PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G053600.1.p
Common NameGLYMA_18G053600, LOC102665092
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 168aa    MW: 19209.1 Da    PI: 9.4109
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G053600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.85.1e-171151343
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                         i+n  +r+ tf kR+ng++KK +E+++LC++e+  ii+s++
  Glyma.18G053600.1.p 11 ISNPAKRKATFKKRKNGLFKKVSEICTLCAIEAYAIIYSPD 51
                         99*************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.283149IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-19161IPR002100Transcription factor, MADS-box
CDDcd002668.64E-25283No hitNo description
PRINTSPR004042.9E-8323IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.98E-22390IPR002100Transcription factor, MADS-box
PfamPF003191.5E-161151IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MARKKVNIRY ISNPAKRKAT FKKRKNGLFK KVSEICTLCA IEAYAIIYSP DEPAKPEVWP  60
SDQGVRSVIF CFREVSELEQ SKKTLCQENL LLRNNLSKAQ EQPKKLKNEN RKKEMSLLMC  120
QYFIVGKNLE NANTIDLNDN TFLTDKKIGE NENEIRDAPS PGDDTSY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVNIRYISNPAKRKATFKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G053600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006603118.11e-120agamous-like MADS-box protein AGL80
TrEMBLA0A0R0EWG41e-119A0A0R0EWG4_SOYBN; Uncharacterized protein
STRINGGLYMA03G19880.16e-78(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1699628
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-30AGAMOUS-like 80