PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G053500.1.p
Common NameGLYMA_18G053500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 214aa    MW: 24522.3 Da    PI: 9.6769
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G053500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.92.6e-13949343
                         --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
               SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                         i n+s+r+ t  kR+ng++KK  E+ +LC++e++ ii+ ++
  Glyma.18G053500.1.p  9 ITNDSKRKATSKKRKNGLIKKLDEIGTLCGIEACAIIYNPN 49
                         89************************************887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.2E-14158IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.736149IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-7121IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.19E-20292IPR002100Transcription factor, MADS-box
CDDcd002663.17E-25281No hitNo description
PfamPF003191.5E-14950IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-72136IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-73657IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MKKVKLVYIT NDSKRKATSK KRKNGLIKKL DEIGTLCGIE ACAIIYNPND PQSEVWPSDL  60
GIQSLLSRFR RIPELQKSKK MFDQESFLRQ SIIKAQEQPK KQKNENRKHE MTHLMFHYLT  120
IGKIFNNPNL IDLNYLSWLI DQNLNEIEKK INRILTQEVT PVIENGGEKA YTNHVPGQGS  180
NMNAMQKHCA GDEMLPFGDV NALNDLWPSP YVP*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the central cell of the female gametophyte and in early endosperm. Also detected in ovaries, young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:16798889}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G053500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003552919.11e-136agamous-like MADS-box protein AGL80
SwissprotQ9FJK31e-41AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A0R0EX621e-157A0A0R0EX62_SOYBN; Uncharacterized protein
STRINGXP_004500454.12e-76(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-44AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]