PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G053400.1.p
Common NameGLYMA_18G053400, LOC100795996
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 230aa    MW: 25807.2 Da    PI: 4.8097
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G053400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.43.8e-181052244
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                         +i n++ r++++ kR++ +lKK eELS+LC++e++ i++++++
  Glyma.18G053400.1.p 10 FIANDTERKTSYKKRKKSLLKKTEELSTLCGIEACAIVYGPDD 52
                         799*************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.9E-20160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.124149IPR002100Transcription factor, MADS-box
CDDcd002662.10E-17285No hitNo description
SuperFamilySSF554551.83E-21294IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-6323IPR002100Transcription factor, MADS-box
PfamPF003193.8E-151052IPR002100Transcription factor, MADS-box
PRINTSPR004047.1E-62338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MTRRKTKLTF IANDTERKTS YKKRKKSLLK KTEELSTLCG IEACAIVYGP DDPQPETWPS  60
EAGVKNVLGK FSTIPEWEQG KKMANQESFI AESIQKGRDK VKKIGKDNKE KEMTMFMYQC  120
FNTGTVHPDN NMAIADLNVL SSVIEQKLRD ISRRMETLNV NETTPQQPEM QTPALPVAPE  180
ETTTTPLNYG PDESDVNADP LESQWFMDLL NGNGDETPMT PFGDVNLPL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RRKTKLTFIANDTERKTSYKKRK
22125KKRKK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the central cell of the female gametophyte and in early endosperm. Also detected in ovaries, young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:16798889}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G053400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003552918.11e-171agamous-like MADS-box protein AGL80
SwissprotQ9FJK33e-43AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLK7MQ391e-169K7MQ39_SOYBN; Uncharacterized protein
STRINGGLYMA18G05990.21e-170(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1823856
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.16e-38AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]