PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G024400.1.p
Common NameGLYMA_18G024400, LOC100805733
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 166aa    MW: 18471 Da    PI: 5.9825
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G024400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601444.6e-4561051100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +Ca+Ck+lrr+C+kdC++apyfp+++p+kfa vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i++lq+q+++l
  Glyma.18G024400.1.p   6 PCASCKLLRRRCTKDCIFAPYFPSNDPQKFALVHKVFGASNVSKMLQELPAHQRGDAVSSLVYEAHARVRDPVYGCVGAISHLQNQVSEL 95 
                          7***************************************************************************************** PP

               DUF260  91 kaelallkee 100
                          + +la++++e
  Glyma.18G024400.1.p  96 QMQLAVAQAE 105
                          *****99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.8045106IPR004883Lateral organ boundaries, LOB
PfamPF031959.1E-456103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MAGNSPCASC KLLRRRCTKD CIFAPYFPSN DPQKFALVHK VFGASNVSKM LQELPAHQRG  60
DAVSSLVYEA HARVRDPVYG CVGAISHLQN QVSELQMQLA VAQAEILCIQ MQQEPLMPNP  120
EMEDPDQKSY LLQNELPQYL NYASSSNVIY DSFSRESIFG HDMVS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2362190.0AC236219.2 Glycine max clone GM_WBc0096D17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003552226.11e-121PREDICTED: LOB domain-containing protein 12-like
SwissprotQ8LBW34e-71LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A0B2RH961e-121A0A0B2RH96_GLYSO; LOB domain-containing protein 12
TrEMBLI1MYZ71e-121I1MYZ7_SOYBN; Uncharacterized protein
STRINGGLYMA18G02780.11e-120(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6016318
FabidsOGEF16643497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.12e-72LBD family protein