PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.18G018200.1.p
Common NameGLYMA_18G018200, LOC106796800
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 310aa    MW: 34588.6 Da    PI: 6.4026
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.18G018200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.23.2e-21122172256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+ge
  Glyma.18G018200.1.p 122 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDNAAFKLRGE 172
                          59******9.**********965...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.59E-36121181No hitNo description
SMARTSM003806.7E-41122185IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-23122180IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.0E-33122180IPR001471AP2/ERF domain
PROSITE profilePS5103223.683122179IPR001471AP2/ERF domain
PfamPF008479.6E-15123172IPR001471AP2/ERF domain
PRINTSPR003672.7E-11123134IPR001471AP2/ERF domain
PRINTSPR003672.7E-11145161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MATVMDMYNT SSIMIPDFLD QCSDQELMKA LEPFMKSDSS SITYPSFSSF SSSPNFSSTT  60
SYEQKVSITP NHASSIKLNQ LTPSQMFQIQ ARIQVPRGQF LSPKPIPMKH VRASPSSKPT  120
KLYRGVRQRH WGKWVAEIRL PKNRTRLWLG TFDTAEEAAL AYDNAAFKLR GENARLNFPH  180
LRHHGARAYG EFGNYKPLPS AVDAKLQAIC QSLGTNSQKL KTQNPIVLDT HKAETETSEF  240
QDFNKVENYQ TSSSSAFSDE YSSSSSSSSP ESDITLLDFS DSCETMDNLG LDLEKYPSVE  300
IDWAALSDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-22121179160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.624160.0root
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.18G018200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9241910.0JQ924191.1 Glycine max clone Gm11lower_Williams_82 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014625788.10.0ethylene-responsive transcription factor ERF060
SwissprotO656656e-75ERF60_ARATH; Ethylene-responsive transcription factor ERF060
TrEMBLI1MYT30.0I1MYT3_SOYBN; Uncharacterized protein
STRINGGLYMA18G02170.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.14e-57ERF family protein