PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G254600.1.p
Common NameGLYMA_17G254600, LOC100776824
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 288aa    MW: 31707.8 Da    PI: 6.2722
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G254600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.15.8e-203988255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                          ykGVr++  +g+WvAeIr+p   + r +r +lg+f+ta eAa a++aa++kl+g
  Glyma.17G254600.1.p 39 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTAREAALAYDAAARKLYG 88
                         69****999.**********8...3.35*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.12E-213898No hitNo description
SuperFamilySSF541719.15E-223996IPR016177DNA-binding domain
PROSITE profilePS5103222.5763996IPR001471AP2/ERF domain
PfamPF008474.2E-143988IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.8E-313997IPR001471AP2/ERF domain
SMARTSM003805.3E-3639102IPR001471AP2/ERF domain
PRINTSPR003675.1E-104051IPR001471AP2/ERF domain
PRINTSPR003675.1E-106278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MLKSGMGIQE RKKVKKPAQA SSRKGCMRGK GGPENATCTY KGVRQRTWGK WVAEIREPNR  60
GARLWLGTFD TAREAALAYD AAARKLYGPD AKLNLPELSV PYAAGVMNPS HMQQQQQQQQ  120
QPQVPQMMMQ QQQPLVHPTF DLVNVTPHSD FNNNSINILN NNPVVSSMAS SFLADAAAPV  180
YTSCDSIVSL PLSATNYTTN NTVPMEMDGY YYSSIAVESK EDDMFRPFWG PTMDDTMPVS  240
DESIWTEAAM SLDYPIVGGG GGFGNNRKFF FGEATAWDSL QTPSFCM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-184096360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1916ERKKVKKP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.559720.0seed coat
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G254600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003549447.30.0ethylene-responsive transcription factor ERF043
RefseqXP_028210195.10.0ethylene-responsive transcription factor ERF043-like
TrEMBLA0A445GBS70.0A0A445GBS7_GLYSO; Dehydration-responsive element-binding protein 2D
TrEMBLK7MNY90.0K7MNY9_SOYBN; Uncharacterized protein
STRINGGLYMA17G37350.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25623380
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.11e-42ERF family protein