PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G228700.1.p
Common NameGLYMA_17G228700, LOC102664611
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 307aa    MW: 34004.3 Da    PI: 9.7327
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G228700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.32.1e-18173206134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          Cs C+t++TplWR+gp g+k+LCnaCG+++rk +
  Glyma.17G228700.1.p 173 CSDCNTSTTPLWRSGPKGPKSLCNACGIRQRKAR 206
                          *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577166.18E-12167207No hitNo description
PROSITE profilePS5011413.072167203IPR000679Zinc finger, GATA-type
SMARTSM004011.8E-16167218IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.6E-15171206IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.00E-13172209No hitNo description
PfamPF003202.7E-16173206IPR000679Zinc finger, GATA-type
PROSITE patternPS003440173198IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MTPYSLNPPG PSIQAGQTQL FNISPNNQDC RTIFNIFDPR KTRIEIGGLR DNYHQQDDKM  60
MVLHDGSSSN SNKSSFNNNI SPEPVVVMVD PIISSACDQQ HNLPYEEESK NIDDHGSGNK  120
WMSSKMRLMK KMMRPSMSPT TDKAINSGLE SSSSRYSQRS LCNNNASSTT RVCSDCNTST  180
TPLWRSGPKG PKSLCNACGI RQRKARRAMT KATSGLITPI TCAKTRVHNK EKKSRANHFA  240
QFKNKYKSTT TTSAGSSEGV RKLEYLKDFA ISLRSNNSDF EQGFPRDEVA EAALLLMDLS  300
CGFVHL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.126331e-172leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G228700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006601232.10.0putative GATA transcription factor 22
RefseqXP_028209837.10.0putative GATA transcription factor 22
TrEMBLA0A445GAN80.0A0A445GAN8_GLYSO; Putative GATA transcription factor 22
TrEMBLI1MXA90.0I1MXA9_SOYBN; Uncharacterized protein
STRINGGLYMA17G34670.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.11e-19cytokinin-responsive gata factor 1