PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G228000.1.p
Common NameGLYMA_17G228000, LOC100807813
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 441aa    MW: 48499.6 Da    PI: 9.449
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G228000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.2e-057092123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C++C k F r  nL+ H r H
  Glyma.17G228000.1.p 70 FVCEICQKGFQRDQNLQLHRRGH 92
                         89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.35E-66992No hitNo description
Gene3DG3DSA:3.30.160.603.0E-56992IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0327092IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.6587092IPR007087Zinc finger, C2H2
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
SMARTSM00355110111141IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.35E-6141166No hitNo description
SMARTSM00355280146166IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MSNLTSASSE ISATSGIRNN NGSSLYAQYS STSISQEPEP KKKRSLPGHP DPEAEVIALT  60
PKTLLATNRF VCEICQKGFQ RDQNLQLHRR GHNLPWKLKK KSSKNVRKKV YVCPEATCVH  120
HDPSRALGDL TGIKKHFFRK HGEKKWKCDK CFKRYAVQSD WKAHSKICGT REYKCDCGTL  180
FSRRDSFITH RAFCDALAQE SGRTVNPLLD LSTQFRSHGL QLQAPSSLLM KGEHDHHFNL  240
LNPEIPSWLL SSPTVVVEEE ALHNSSQTIR STLDNFSTIP QLLFPTAQHV NNYHSSSLVH  300
HDQNPNPSTT TTTTSSTTLL PSLSTSFHSS SSFPHMSATA LLQKASQIGV TVSCSTAAPS  360
SQTMMLVRPH LLLHQQVHVP ECSTTTAIAT TGTTLGYNNN NNNNNNNNMA SSSAVSSGMF  420
VMPSREEIGT TLGFARGLAS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-33142203364Zinc finger protein JACKDAW
5b3h_F2e-33142203364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196108KLKKKSSKNVRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G228000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2358911e-165AC235891.2 Glycine max clone GM_WBc0069F21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006601228.10.0protein indeterminate-domain 7
RefseqXP_006601229.10.0protein indeterminate-domain 7
RefseqXP_028211692.10.0protein indeterminate-domain 7-like
RefseqXP_028211693.10.0protein indeterminate-domain 7-like
TrEMBLA0A445GAP00.0A0A445GAP0_GLYSO; Protein indeterminate-domain 2 isoform A
TrEMBLK7MNF80.0K7MNF8_SOYBN; Uncharacterized protein
STRINGGLYMA17G34601.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-103indeterminate(ID)-domain 2