PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G217100.1.p
Common NameGLYMA_17G217100, LOC100777171
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARR-B
Protein Properties Length: 668aa    MW: 73691.4 Da    PI: 6.3288
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G217100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like84.21.3e-26206259155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          kpr++W+ eLH++Fv+av+ L G++kA+Pk+il+lm+ + Lt+e+v+SHLQkYRl
  Glyma.17G217100.1.p 206 KPRVVWSVELHRKFVSAVNLL-GIDKAVPKKILDLMNDEKLTRENVASHLQKYRL 259
                          79*******************.********************************8 PP

2Response_reg77.16.3e-26221301109
                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 
                          vl vdD+ + +++l+++l++ +y +v++++++  al+ll+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++ +++++++ +
  Glyma.17G217100.1.p  22 VLAVDDDSTCLMVLETLLRRCQY-HVTTTKNAITALNLLRENKtmFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSVNDDPKMVMK 109
                          799********************.***************99999********************87754.558***************** PP

                          HHHTTESEEEESS--HHHHHH CS
         Response_reg  89 alkaGakdflsKpfdpeelvk 109
                           +  Ga d+l Kp+ +eel +
  Glyma.17G217100.1.p 110 GITHGACDYLLKPVRIEELQN 130
                          ******************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.6E-1641666IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23003.7E-4219156No hitNo description
SuperFamilySSF521722.56E-3519144IPR011006CheY-like superfamily
SMARTSM004485.0E-3120132IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.41621136IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.2E-2322130IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.76E-2623136No hitNo description
PROSITE profilePS5129410.403203262IPR017930Myb domain
SuperFamilySSF466891.56E-18203263IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-28204264IPR009057Homeodomain-like
TIGRFAMsTIGR015577.5E-24206259IPR006447Myb domain, plants
PfamPF002491.5E-6208258IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MTVVENHTMD DLRDQFPIGM RVLAVDDDST CLMVLETLLR RCQYHVTTTK NAITALNLLR  60
ENKTMFDLVI SDVHMPDMDG FKLLELVGLE MDLPVIMLSV NDDPKMVMKG ITHGACDYLL  120
KPVRIEELQN IWQHVIRRKK IDSKEQNKTS DYDKTNSDSG NGRGSAATGN SDQNGKPSKK  180
RKDQDEDDDE ENDTDHDNED PSTQKKPRVV WSVELHRKFV SAVNLLGIDK AVPKKILDLM  240
NDEKLTRENV ASHLQKYRLY LKRISCGANR QANMVAALGT ADSSYLRMGS LSGVGHLQTL  300
TGPQQFHNNA FRPFPPGGMI GRLNTSVGLN NHGLSSSEAL QLSHAQNLNN SINDPLKFQS  360
SIACGNQNAI QGMPMSIGLD QLQHNKGVSV SVGPIQNMSP LIDARPTFAV SNRLSDQIPK  420
VTMGCSPSPV LDVSNNALVL KADSENTQGR GVYENLTSVA SQHSQFSLPL LGHGRCSDIW  480
SSPMRSSGTN SYPPSETLQG GNLSGASSIT SLSNQSHDSQ TDMHSQGLIF TNNSGQISNN  540
VPFLGWDDHN HDSSYHSNVI GNSIDSLIDP EGHTSINSTY NRNLDFNFCD PLQMKHDGIM  600
GLSDENSLKQ QHRYIMNQQK SQNSRAPNNI GSLEDFVSSM MKQKQDKVKF LDGSYLCNNN  660
YPDGTSM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-24202265164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G217100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2362210.0AC236221.2 Glycine max clone GM_WBc0105L07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003549312.10.0two-component response regulator ARR12
SwissprotB8AEH11e-138ORR23_ORYSI; Two-component response regulator ORR23
SwissprotQ6K8X61e-138ORR23_ORYSJ; Two-component response regulator ORR23
TrEMBLI1MWY80.0I1MWY8_SOYBN; Two-component response regulator
STRINGGLYMA17G33230.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95634112
Representative plantOGRP29217120
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-129response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]