PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G172400.1.p
Common NameGLYMA_17G172400, LOC100806962
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 273aa    MW: 30765.5 Da    PI: 6.6083
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G172400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.29.7e-16100145454
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+L
  Glyma.17G172400.1.p 100 VHNLSEKRRRSRINEKLKALQNLIPNS-----NKTDKASMLDEAIEYLKQL 145
                          6*************************7.....5*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.108.4E-2093156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-1993156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.89896145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.19E-1599150No hitNo description
PfamPF000102.5E-13100145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-16102151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MSSSTQDEIS FVLRQFLLRS SVTTHESNDD ARNSMSKTAL PDGISAYKGS SAANVSSLSV  60
AASENETDDF DCESEEEEVP TPPKSIRSRS SSKRNRAAEV HNLSEKRRRS RINEKLKALQ  120
NLIPNSNKTD KASMLDEAIE YLKQLHLKVQ MLSMRNGLSL HTMFFQEGLQ PLQLSQVPRM  180
DSGEESRLIP SNPTASLPMH QENPMHYLSN LPNKLAMADQ QSVPTPSYII NSETSFRLES  240
PIPENIRSFQ LRRFPEMCRE DILQHQHLNA NH*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.336396e-81cotyledon
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311174e-76KT031117.1 Glycine max clone HN_CCL_124 bHLH transcription factor (Glyma11g05810.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006600959.10.0PREDICTED: transcription factor SPATULA-like isoform X1
SwissprotQ9FUA43e-42SPT_ARATH; Transcription factor SPATULA
TrEMBLK7MM490.0K7MM49_SOYBN; Uncharacterized protein
STRINGGLYMA17G19570.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25816128
FabidsOGEF22763379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.13e-40bHLH family protein