PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G142300.1.p
Common NameGLYMA_17G142300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 264aa    MW: 29235.1 Da    PI: 9.4517
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G142300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00029426123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         +kC+ C++sFs+   L  H++ H
  Glyma.17G142300.1.p  4 HKCKLCSRSFSNGRALGGHMKAH 26
                         79******************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.04E-5326No hitNo description
PfamPF139127.5E-8328IPR007087Zinc finger, C2H2
SMARTSM003550.028426IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.115431IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576679.04E-5155179No hitNo description
SMARTSM00355160160180IPR015880Zinc finger, C2H2-like
PfamPF139120.004160179IPR007087Zinc finger, C2H2
SuperFamilySSF576677.52E-5200225No hitNo description
PfamPF139121.6E-11201225IPR007087Zinc finger, C2H2
SMARTSM003551.2202224IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.411202224IPR007087Zinc finger, C2H2
PROSITE patternPS000280204224IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MDRHKCKLCS RSFSNGRALG GHMKAHLASL PLPLPPKLHS CFSSSDSEQE QSLRENPKKT  60
LRILDPEDRE SETESNKNPT RQRSKRNWKS TMPKLSLGHP EAEPLSSVSD TSPEEDLAMC  120
LMMLSRDTWQ EHKLANAGPP KTRCSSGSEI KLKNKVRSKH LCHACHKSFR SSRALGSHRT  180
LCSPRQEAQN NSIISNNNIK VFECPFCYKL FGSGQALGGH KRSHLIPSSS STVNHSVKLK  240
QSFIDLNLPA PAEDDDLSVV SDA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18085RQRSKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.387140.0epicotyl
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G142300.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC9671260.0KC967126.1 Glycine max C2H2-type zinc finger protein 5 (ZFP5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001304590.20.0zinc finger protein ZAT4-like
RefseqXP_028209661.10.0zinc finger protein ZAT4-like
TrEMBLA0A445G6N30.0A0A445G6N3_GLYSO; Zinc finger protein ZAT9
TrEMBLI1MV170.0I1MV17_SOYBN; Uncharacterized protein
STRINGGLYMA17G15140.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Representative plantOGRP24041030
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-41C2H2-like zinc finger protein