PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G062600.1.p
Common NameGLYMA_17G062600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 578aa    MW: 62166.2 Da    PI: 7.9154
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G062600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2476.2e-15299350155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Glyma.17G062600.1.p 299 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 350
                          57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.88E-14150266No hitNo description
Gene3DG3DSA:3.30.730.107.2E-13151173IPR001471AP2/ERF domain
SMARTSM003805.9E-21151270IPR001471AP2/ERF domain
PROSITE profilePS5103215.909151264IPR001471AP2/ERF domain
PRINTSPR003678.9E-5152163IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-9219266IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.2E-13228265IPR001471AP2/ERF domain
PRINTSPR003678.9E-5246266IPR001471AP2/ERF domain
CDDcd000187.76E-25299360No hitNo description
PfamPF008477.7E-10299350IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-18299360IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.9E-18300359IPR001471AP2/ERF domain
PROSITE profilePS5103219.045300358IPR001471AP2/ERF domain
SMARTSM003801.5E-33300364IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MDSSSSSPPN STNNNSLAFS LSNHFPNPSS SPLSLFHSFT YPSLSLTGSN TVDAPPEPTA  60
GAGPTNLSIF TGGPKFEDFL GGSAATATTV ACAPPQLPQF STDNNNHLYD SELKSTIAAC  120
FPRALAAEQS TEPQKPSPKK TVDTFGQRTS IYRGVTRHRW TGRYEAHLWD NSCRREGQSR  180
KGRQVNNTAY VVERGVISNI LTVLCFVSLR GFCTWGIIAD SWGSFAHYAV SVYLGGYDKE  240
DKAARAYDLA ALKYWGPTTT TNFPISNYEK ELEEMKNMTR QEFVASLRRK SSGFSRGASI  300
YRGVTRHHQH GRWQARIGRV AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG LNAVTNFDMS  360
RYDVKSIANS TLPIGGLSGK NKNSTDSASE SKSHEPSQSD GDPSSASSVT FASQQQPSSS  420
NLSFAIPIKQ DPSDYWSILG YHNTPLDNSG IRNTTSTVTT TTFPSSNNGT ASSLTPFNME  480
FSSAPSSTGS DNNAAFFSGG GIFVQQQTSH GHGNASSGSS SSSLSCSIPF ATPIFSLNSN  540
TSYESSAGYG NWIGPTLHTF QSHAKPSLFQ TPIFGME*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.331230.0cotyledon| hypocotyl| root| somatic embryo| stem| vegetative bud
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310930.0KT031093.1 Glycine max clone HN_CCL_134 AP2-EREBP transcription factor (Glyma17g07010.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003549414.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-142AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A0R0F9G40.0A0A0R0F9G4_SOYBN; Uncharacterized protein
STRINGGLYMA17G07010.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11217209
FabidsOGEF125622735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-132AINTEGUMENTA-like 5