PlantRegMap
Plant Transcription Factor Database
PlantTFDB
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.17G062600.1.p
Common NameGLYMA_17G062600
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 578aa    MW: 62166.2 Da    PI: 7.9154
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.17G062600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2476.2e-15299350155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Glyma.17G062600.1.p 299 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 350
                          57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.88E-14150266No hitNo description
Gene3DG3DSA:3.30.730.107.2E-13151173IPR001471AP2/ERF domain
SMARTSM003805.9E-21151270IPR001471AP2/ERF domain
PROSITE profilePS5103215.909151264IPR001471AP2/ERF domain
PRINTSPR003678.9E-5152163IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-9219266IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.2E-13228265IPR001471AP2/ERF domain
PRINTSPR003678.9E-5246266IPR001471AP2/ERF domain
CDDcd000187.76E-25299360No hitNo description
PfamPF008477.7E-10299350IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-18299360IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.9E-18300359IPR001471AP2/ERF domain
PROSITE profilePS5103219.045300358IPR001471AP2/ERF domain
SMARTSM003801.5E-33300364IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MDSSSSSPPN STNNNSLAFS LSNHFPNPSS SPLSLFHSFT YPSLSLTGSN TVDAPPEPTA  60
GAGPTNLSIF TGGPKFEDFL GGSAATATTV ACAPPQLPQF STDNNNHLYD SELKSTIAAC  120
FPRALAAEQS TEPQKPSPKK TVDTFGQRTS IYRGVTRHRW TGRYEAHLWD NSCRREGQSR  180
KGRQVNNTAY VVERGVISNI LTVLCFVSLR GFCTWGIIAD SWGSFAHYAV SVYLGGYDKE  240
DKAARAYDLA ALKYWGPTTT TNFPISNYEK ELEEMKNMTR QEFVASLRRK SSGFSRGASI  300
YRGVTRHHQH GRWQARIGRV AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG LNAVTNFDMS  360
RYDVKSIANS TLPIGGLSGK NKNSTDSASE SKSHEPSQSD GDPSSASSVT FASQQQPSSS  420
NLSFAIPIKQ DPSDYWSILG YHNTPLDNSG IRNTTSTVTT TTFPSSNNGT ASSLTPFNME  480
FSSAPSSTGS DNNAAFFSGG GIFVQQQTSH GHGNASSGSS SSSLSCSIPF ATPIFSLNSN  540
TSYESSAGYG NWIGPTLHTF QSHAKPSLFQ TPIFGME*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.331230.0cotyledon| hypocotyl| root| somatic embryo| stem| vegetative bud
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Present in inflorescence meristem and later in young floral mersitems. Expressed in sepal, petal, stamen and carpel primordia. In petal, progressively confined to petal margin and epidermal cells. Restricted to sporogenous tissue in the stamen and to the medial ridge of the carpel. Present in tissues that develop from this ridge, such as placenta and ovule primordia. In ovules, first expressed in distal part of the funiculus and the outer integument, before being confined to the funiculus. {ECO:0000269|PubMed:15988559}.
UniprotTISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.17G062600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310930.0KT031093.1 Glycine max clone HN_CCL_134 AP2-EREBP transcription factor (Glyma17g07010.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001242799.10.0AP2-like ethylene-responsive transcription factor AIL5
RefseqXP_028211618.10.0AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-141AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA0A0R0F9G40.0A0A0R0F9G4_SOYBN; Uncharacterized protein
STRINGGLYMA17G07010.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125622735
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-132AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]