PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G156700.1.p
Common NameGLYMA_16G156700, LOC100798251
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 472aa    MW: 53895.3 Da    PI: 7.2664
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G156700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS293.55.7e-90874691374
                 GRAS   1 lvelLlecAeavss.gdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                          l++lLl+ A+av++ ++  +a + L  l +++s +gd++qR++ayf+ +Laarl+ + s  y+ l  ++ts    +ee+ a++ ++ vsP
  Glyma.16G156700.1.p  87 LIHLLLSTATAVDDqRNYCAALENLIDLYQTVSLTGDSVQRVVAYFADGLAARLLTKKSPFYDMLMEEPTS----EEEFLAFTDLYRVSP 172
                          689*********974778899*****************************************999888886....788889999****** PP

                 GRAS  90 ilkfshltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel 172
                          +++f+h+taNqaIlea e+e     +++H+iDfd+s+G+QWp+L+q+L++++  ++  slRiTg+g+    + +el+et+ rL +f + +
  Glyma.16G156700.1.p 173 YYQFAHFTANQAILEAYEEEeernnKALHVIDFDVSYGFQWPSLIQSLSEKAtsGNRISLRITGFGN----NLKELQETEARLVSFSKGF 258
                          ******************9988887889**********************99755566*********....99***************99 PP

                 GRAS 173 g..vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflea 260
                          g  + fef+ l      + ++ +Lr k++E++aVnlv  l +      +  +  +++L +v slsP +vv+v qe +++ ++Fl rf+e+
  Glyma.16G156700.1.p 259 GnhLVFEFQGL---LRGSSRVFNLRKKKNETVAVNLVSYLNTSS----CFMK-ASDTLGFVHSLSPSIVVLVKQEGSRSLKTFLSRFTES 340
                          73366777775...33455679****************888775....3333.478********************************** PP

                 GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvva..cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.s. 346
                          l+y++a+fdsl+  lp es er k+E+++lg+ei++++   + g +   + e++e+W+ r+e+ GF   ++s+k + qaklll++     
  Glyma.16G156700.1.p 341 LHYFAAMFDSLDDCLPLESTERLKIEKKVLGKEIKSMLNydMDGVDYCPKYERMETWKGRMENHGFVGRKISSKCVIQAKLLLKMRThYy 430
                          **************************************822457778999*********************************9865111 PP

                 GRAS 347 ......dg...yrveee.sgslv.lgWkdrpLvsvSaWr 374
                                +g   +rv e+ +g ++ lgW++r L++vS+W+
  Glyma.16G156700.1.p 431 plqfeeEGgggFRVSERdEGRVIsLGWQNRFLLTVSSWQ 469
                          111111212336666654555558**************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.50461436IPR005202Transcription factor GRAS
PfamPF035142.0E-8787469IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MEDSEEEELL NLTLSVDAGR KRRKKGRTRD SNNNNSNTNS VIIPIKSNEG MIFRLLQMRE  60
LMLRQDHRIR KGVVEDGINN NKNGLPLIHL LLSTATAVDD QRNYCAALEN LIDLYQTVSL  120
TGDSVQRVVA YFADGLAARL LTKKSPFYDM LMEEPTSEEE FLAFTDLYRV SPYYQFAHFT  180
ANQAILEAYE EEEERNNKAL HVIDFDVSYG FQWPSLIQSL SEKATSGNRI SLRITGFGNN  240
LKELQETEAR LVSFSKGFGN HLVFEFQGLL RGSSRVFNLR KKKNETVAVN LVSYLNTSSC  300
FMKASDTLGF VHSLSPSIVV LVKQEGSRSL KTFLSRFTES LHYFAAMFDS LDDCLPLEST  360
ERLKIEKKVL GKEIKSMLNY DMDGVDYCPK YERMETWKGR MENHGFVGRK ISSKCVIQAK  420
LLLKMRTHYY PLQFEEEGGG GFRVSERDEG RVISLGWQNR FLLTVSSWQP V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-39864693375GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003548951.10.0PREDICTED: scarecrow-like protein 21
TrEMBLI1MNY60.0I1MNY6_SOYBN; Uncharacterized protein
STRINGGLYMA16G27310.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP81961117
FabidsOGEF62002952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.13e-55GRAS family protein