PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G147200.1.p
Common NameGLYMA_16G147200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 445aa    MW: 48714.8 Da    PI: 4.9302
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G147200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.93.1e-12260303755
                          HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          ++ErrRR+++N+++  Lr+++P+ +      K++ a+iL  A++Y+++Lq
  Glyma.16G147200.1.p 260 MAERRRRKKLNDKLYMLRSVVPNiS------KMDRASILGDAIDYLRELQ 303
                          79*********************66......******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.177253302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-16255320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.4E-10259303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-15259308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-15260314IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.30E-13260303No hitNo description
CDDcd048733.40E-6373433No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MLPTRALTHT LGVPWTEPEN DAVTGDAALL ASFKSMLDRD WYMDQPHCDF LQNDAAFLEH  60
PLGSSSSSSS SSLPQQQHFV VPPKPCYFNV NGNGPLECGF ELGSQSSFLA PFPVNALELS  120
LDPEFPASKP GGGLIRREEK QRPLDALAPS TLYQKRTERW REAGKAEELA MPPPPPPQLA  180
MEKRRKRGEE GEDEGGLNYE SGEDMKLEEN GVDANNNDND NDDDDDDGDG DNGNGNGGGG  240
GGDQKGKKKK RKKMPAKNLM AERRRRKKLN DKLYMLRSVV PNISKMDRAS ILGDAIDYLR  300
ELQVRITDLN HELESGPPGS SLPPAASFHP VTPTLPTLPC RVKEEICPIS LPSPKNQSAK  360
VEVTVREGGA VNIHMFCAHR PGLLLSTMRA MDSLGLDVQQ AVISCFNGFS LDVFRAEQCR  420
EGQDVLPEQI KEVLLDTAGF HGMM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1243251QKGKKKKRK
2246251KKKKRK
3246252KKKKRKK
4246253KKKKRKKM
5246264KKKKRKKMPAKNLMAERRR
6248252KKRKK
7249267KRKKMPAKNLMAERRRRKK
8250267RKKMPAKNLMAERRRRKK
9261268ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM9899290.0HM989929.1 Glycine max ICEe mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001241335.10.0uncharacterized protein LOC100805320
SwissprotQ9LSE21e-106ICE1_ARATH; Transcription factor ICE1
TrEMBLA0A0R0FQW70.0A0A0R0FQW7_SOYBN; Uncharacterized protein
STRINGGLYMA16G26291.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5571678
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.46e-91bHLH family protein