PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G141100.1.p
Common NameGLYMA_16G141100, LOC100783947
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 512aa    MW: 52998.3 Da    PI: 7.5974
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G141100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-056082123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C++C+k F r  nL+ H r H
  Glyma.16G141100.1.p 60 FVCEICNKGFQRDQNLQLHRRGH 82
                         89*******************88 PP

2zf-C2H211.30.0011136158123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC +C+k +  +s+ k H +++
  Glyma.16G141100.1.p 136 WKCDKCSKKYAVQSDWKAHSKVC 158
                          58*****************9877 PP

3zf-C2H211.70.00081166184523
                          TTTEEESSHHHHHHHHHHT CS
              zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                          dCg++Fsr++++ +H   +
  Glyma.16G141100.1.p 166 DCGTVFSRRDSFITHRAFC 184
                          9**************8765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-55982IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.99E-75982No hitNo description
SMARTSM003550.0176082IPR015880Zinc finger, C2H2-like
PfamPF121718.2E-56082IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9496082IPR007087Zinc finger, C2H2
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
SMARTSM00355200101131IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.1E-4124157IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.99E-7131156No hitNo description
SMARTSM00355150136156IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009937Biological Processregulation of gibberellic acid mediated signaling pathway
GO:0010029Biological Processregulation of seed germination
GO:0010431Biological Processseed maturation
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MPVDLDNAST ASGEAASVSS SGHQTKPAVP KKKRNLPGMP DPEAEVIALS PTALLATNRF  60
VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ RSSKEVRKRV YVCPEPTCVH HDPARALGDL  120
TGIKKHFCRK HGEKKWKCDK CSKKYAVQSD WKAHSKVCGT REYKCDCGTV FSRRDSFITH  180
RAFCDVLAEE NVRSHAVVKD NSENDSKVLT LTGDSPPLQP VSATVATTTT QTNSAMSCGL  240
QTQNLELPET NPPQVIEEEP QGATAVSGSC GSNSTCSTSN GGATSNSNSS SSVFAGLFAS  300
STASGSLQSQ TPAFSDLIRA MGPPEHPADL ISAPSSSEAI SLCLSTTSAS PIFATGGQQY  360
VSSPPQPAMS ATALLQKAAQ MGAAATNASL LRGFGIVSSS SLASTSSGQQ NGLQWGQQQL  420
ESESGSVPAA GLGLGLPCED GGSGLKELMM GTPSMFGPKH TTLDFLGLGM AAGGTAGGGL  480
SALITSIGGG LDVTAAFGNG DFSGKDIGGS S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-34132201372Zinc finger protein JACKDAW
5b3h_F3e-34132201372Zinc finger protein JACKDAW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.303810.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Strongly up-regulated during seed development. {ECO:0000269|PubMed:21571950}.
UniprotTISSUE SPECIFICITY: At 3 days post anthesis (DPA), expressed in the chalazal endosperm region. By 6 DPA, expressed in the endosperm and embryo. In fully germinated seed, strongest expression in the root tip and not detected in the cotyledons. In 4-days old seedlings, restricted to the vasculature of the cotyledons, the shoot apical meristem region, and the root tip. By 8 days, restricted to newly emerged leaves. {ECO:0000269|PubMed:21571950}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00592DAPTransfer from AT5G66730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G141100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003547992.10.0protein indeterminate-domain 2
RefseqXP_028207144.10.0zinc finger protein GAI-ASSOCIATED FACTOR 1-like
SwissprotQ9LVQ71e-172IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBLA0A445GIG80.0A0A445GIG8_GLYSO; Protein indeterminate-domain 1
TrEMBLI1MNH40.0I1MNH4_SOYBN; Uncharacterized protein
STRINGGLYMA16G25550.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22183286
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-139indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]