PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G102000.1.p
Common NameGLYMA_16G102000, LOC102667003
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 414aa    MW: 45168.6 Da    PI: 8.0811
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G102000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.000443759123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C++C+k F +   L  H+r H
  Glyma.16G102000.1.p 37 WVCHICKKGFGSGKALGGHMRIH 59
                         58*******************99 PP

2zf-C2H218.36.2e-0693114223
                          EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                          +C+ CgksFs+  +L  H+r+H
  Glyma.16G102000.1.p  93 TCSLCGKSFSSMKSLFGHLRSH 114
                          6********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.3E-83659No hitNo description
SMARTSM003550.0563759IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.2423764IPR007087Zinc finger, C2H2
PfamPF139122.1E-73859IPR007087Zinc finger, C2H2
PROSITE patternPS0002803959IPR007087Zinc finger, C2H2
SuperFamilySSF576678.3E-887114No hitNo description
SMARTSM003550.01392114IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.57592119IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.7E-493114IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
PfamPF139123.0E-794116IPR007087Zinc finger, C2H2
PfamPF128748.5E-4257277No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MEKDQEAQHH RENQGSLVTT VKVEGSEAVN NNEHRSWVCH ICKKGFGSGK ALGGHMRIHN  60
LSKKQQVHRA KQGTTIVAKP KTNKWVFVSG NPTCSLCGKS FSSMKSLFGH LRSHPERMRK  120
GIQNNTPSIN GASSNSTSSS TLSDDSTAVD LSQALRGCWS VSAKRGRRSP SCSKSNSGLE  180
DDGEIEPRMQ EAVYNLMLLA SGNPKREEEL DGDQIEEKKL LNPVFGDSDE MKRDRKRVTK  240
KMKLTELEAA EEGDKLCRIC NTTFPSPQVL EGHLCSSKIF KNIQVMDESE SDGVLATKEE  300
HHAKKPTMQG EETTVLGGNA VEAIRGYHCK IFIKTFSTGQ VFGDHKISNW TSTAEAQSSA  360
QATSSPVGNA QNCSKILTFD LNQLPAMDGQ DGVQSDLFIP ANIVTSFSYG SSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G102000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006599222.10.0zinc finger protein ZAT1
RefseqXP_028206665.10.0zinc finger protein ZAT1-like
TrEMBLA0A0B2SSB40.0A0A0B2SSB4_GLYSO; Uncharacterized protein
TrEMBLI1MML80.0I1MML8_SOYBN; Uncharacterized protein
STRINGGLYMA16G18060.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97372437
Representative plantOGRP706138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26940.12e-15C2H2 family protein