PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G049400.1.p
Common NameGLYMA_16G049400, LOC100804797
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 451aa    MW: 49414.8 Da    PI: 5.2298
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G049400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.2e-11265307754
                          HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A++Y+k+L
  Glyma.16G049400.1.p 265 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 307
                          79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.682258307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.1E-16261327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-14264313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-9264307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.58E-13265311No hitNo description
Gene3DG3DSA:4.10.280.101.2E-15265320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048734.43E-7379420No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MNMERYTLPA PPINIILEEE EEEENIAIAM GAPLIPSFKS MLQHQQQQPD SYFNFNFNSS  60
ISSATIPFVP NMESFPSLDP FSPSLSSLPF FNNNSSNNMA FDPGFDLGLD TTGLHSSVPP  120
APHLFSQAQM GFEFSELEAL TGPGNGNNAP FADGAKVAAA MLLRPPPLDG AQQQQQQPTL  180
YRKRRGTAAE IPGLETVRRK GRKWEEGGRG GEGEEGSSAD VDGSGLNYES DEQNENNGNN  240
GLKLSENNGG DNKGKRKGLP AKNLMAERRR RKKLNDRLYM LRSVVPKISK MDRASILGDA  300
IDYLKELLQR INDLHNELES TPPGSLLTPS STSFQPLTPT LPTLPCRVKE ELYPGTLPSP  360
KNQAAKVEVR VREGRAVNIH MFCTRRPGLL LSTMRALDNL GLDVQQAVIS CFNGFALDVF  420
KAEQCREGQD VLPEQIKAVL LDSAGFHGMM *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1254272KRKGLPAKNLMAERRRRKK
2266273ERRRRKKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.609420.0cotyledon| leaf| root| somatic embryo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM9899250.0HM989925.1 Glycine max ICEa mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001241268.10.0transcription factor ICE1-like
SwissprotQ9LSE21e-117ICE1_ARATH; Transcription factor ICE1
TrEMBLE7CZZ30.0E7CZZ3_SOYBN; ICEa
STRINGGLYMA16G05390.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5571678
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-97bHLH family protein