PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G023900.1.p
Common NameGLYMA_16G023900, LOC100804434
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 619aa    MW: 68575.6 Da    PI: 6.3937
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G023900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.72.1e-13451497455
                          HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI++Lq
  Glyma.16G023900.1.p 451 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYINQLQ 497
                          799***********************66......******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.6E-5351235IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474592.88E-18446511IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.028447496IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.76E-15450501No hitNo description
Gene3DG3DSA:4.10.280.109.7E-18451509IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-11451497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-17453502IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MKIEVGLGGV WNEDEKATVV EVLGREAFDY LVANSVSNEN LLMAFGSGEN LQNKLSGLVE  60
RPNASNFSWN YAIYWQISQS KYGDWILGWG DGCCREPRDG EEGGEVRIVD DEKVQRMRKR  120
VLQKLHMTFG GSDEDIYAFG LDRVTDTEMF FLVSMYFSFP RGLGGPGKCF ASGKHLWISD  180
MFKSGFDYCV RSFLAKSAGI QTVVLVPTDL GVVEMGSVRT VDESFELLQA VKSVFSAPLV  240
LPKVKPTAPL DLVSEKRDGN ESANALFCGL AIVDKNKNNN SHSNNRVEGV GVPKIFGQDL  300
NCSTQFREKL AVRKMEERPW PWGGHPPNGN SIGFPNGVHG SSWGAGEVVR QLGHPEILAP  360
RLASSGALPD VANSAKNDFV HNNFQQQQLP VQMQFDFSRA TSRASERSII AESEISDIKA  420
SCKEERMSIA DDRRPRKRGR KPANGREEPL NHVEAERQRR EKLNQRFYAL RAVVPNISKM  480
DKASLLGDAI AYINQLQAKL KTMEFERERF GSTCVDGPVL DVNAEVEKNH HNGAPDMDVQ  540
AAQDGVIVKV SCPIDVHPVS KVIQTFKEAE IGVVESRLTV ANDTVFHTFV VKSEGPDQVT  600
KDKLIALFSK ESNFIQTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-22492367193Transcription factor MYC3
4rqw_B3e-22492367193Transcription factor MYC3
4rs9_A3e-22492367193Transcription factor MYC3
4yz6_A3e-22492367193Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1432440RRPRKRGRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014624758.10.0PREDICTED: transcription factor bHLH13
SwissprotQ9LNJ50.0BH013_ARATH; Transcription factor bHLH13
TrEMBLA0A0B2Q2W30.0A0A0B2Q2W3_GLYSO; Transcription factor bHLH13
TrEMBLI1MKI10.0I1MKI1_SOYBN; Uncharacterized protein
STRINGGLYMA16G02690.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54483254
Representative plantOGRP25311123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-113bHLH family protein