PlantTFDB
Plant Transcription Factor Database
v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G007400.1.p
Common NameGLYMA_16G007400, LOC100809762
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 575aa    MW: 63424.4 Da    PI: 6.4278
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G007400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.11.4e-15244303155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aaka++ a++k++g
  Glyma.16G007400.1.p 244 SQYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDKEEKAAKAYDLAALKYWG 303
                          78*******************655454478446*************************98 PP

2AP248.12.9e-15346397155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Glyma.16G007400.1.p 346 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 397
                          78****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-17244313IPR016177DNA-binding domain
PfamPF008476.7E-12244303IPR001471AP2/ERF domain
CDDcd000182.07E-21244313No hitNo description
SMARTSM003804.6E-29245317IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-15245312IPR001471AP2/ERF domain
PROSITE profilePS5103218.953245311IPR001471AP2/ERF domain
PRINTSPR003671.3E-6246257IPR001471AP2/ERF domain
PfamPF008475.8E-10346397IPR001471AP2/ERF domain
CDDcd000184.29E-25346407No hitNo description
SuperFamilySSF541719.15E-18346407IPR016177DNA-binding domain
SMARTSM003803.6E-34347411IPR001471AP2/ERF domain
PROSITE profilePS5103219.006347405IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-18347405IPR001471AP2/ERF domain
PRINTSPR003671.3E-6387407IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MSNWLGFSLT PHLRIDEEFE RENQERGGGY HHPSPSCHPH LSVMPLRSDG SLCVADSFSH  60
SAASQEWRYD SAIGGGNSNE EGPKLEDFLG CYSNSPAKVF CQDSQPDQNQ SQNNVSKINV  120
NVAPSFCTNN SEIETGDNLT NPSSLLHSFH AYNDNSHALI PTNGMYKSWL AQTQFSSDGK  180
PSNEANGCNF QSLSLTMSPS VQNGVGAISS VQVNEDSRKR VMAKSHAREP VPRKSIDTFG  240
QRTSQYRGVT RHRWTGRYEA HLWDNSCRKE GQTRKGRQVY LGGYDKEEKA AKAYDLAALK  300
YWGPTTHINF PLSTYEKELE EMKHMTRQEF VANLRRKSSG FSRGASVYRG VTRHHQHGRW  360
QARIGRVAGN KDLYLGTFST QEEAAEAYDI AAIKFRGTSA VTNFDISRYD VKRICSSSTL  420
IAGDLAKRSP KESPAPVPAS DFNSCGSSPM PLVSQPPPLA ITDGEHSDEL SNMMWNANNS  480
DEQAQNESGG AEFNNNVTES SSSQQVSPSS NKDALNPQSP NEFGVSGADY GHGYFTLDGP  540
KYDDGNNEND HMSTNRLGNL GLVNQVPMFA LWNE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.566260.0somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G007400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2359130.0AC235913.2 Glycine max clone GM_WBc0225O09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006598829.10.0AP2-like ethylene-responsive transcription factor AIL1 isoform X1
RefseqXP_028206124.10.0AP2-like ethylene-responsive transcription factor AIL1 isoform X1
SwissprotQ1PFE11e-139AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A445GCI20.0A0A445GCI2_GLYSO; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLK7MEH00.0K7MEH0_SOYBN; Uncharacterized protein
STRINGGLYMA16G00950.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102743137
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-122AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]