PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G004300.1.p
Common NameGLYMA_16G004300, LOC100812983
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 362aa    MW: 38250.4 Da    PI: 7.3189
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G004300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP132.34.6e-41241274113
                  TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.... 88 
                           k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++  ++s +ss+s+ s++    
  Glyma.16G004300.1.p  24 PKRSTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSsLNVSLRSSGSTLSAPpsks 113
                          699****************************************************************99977788888877554444333 PP

                  TCP  89 .......kaaksaakskksqksaasalnlake 113
                                 +                  l+la++
  Glyma.16G004300.1.p 114 aphtfhgA------------------LALAHH 127
                          33333330..................333333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.2E-3927149IPR005333Transcription factor, TCP
PROSITE profilePS5136928.4962882IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MKKLTGGASS PASSSSLAIP TANPKRSTKD RHTKVDGRGR RIRMPATCAA RVFQLTRELG  60
HKSDGETIEW LLQQAEPAII AATGTGTIPA NFSSLNVSLR SSGSTLSAPP SKSAPHTFHG  120
ALALAHHPYE EAFQHPALLG FHPHAHQPQQ LLSADHIPES LPSGAGDSGD NYLRKRYRED  180
LFKDDNINNN NTQSQNESGD GDGSSPKLPK QQSEAGSGLL RPSNLLPATA MWAVAPSPAS  240
GPPGSTIWML PVTAGASSSA SSETQMWPFP QSVSGFMPRF NLPVPGALEF QGARAGSLQL  300
GSMSMPQQQH LGLAMSDSNL GMLAALNAYT RASLNVNSDH HQHQHQSQPS ESGEDDPNSS  360
Q*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.76380.0stem
Functional Description ? help Back to Top
Source Description
UniProtCan specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G004300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-132AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003548679.10.0transcription factor TCP8
RefseqXP_028208007.10.0transcription factor TCP8-like
SwissprotQ9C5184e-82TCP8_ARATH; Transcription factor TCP8
TrEMBLA0A445GCG70.0A0A445GCG7_GLYSO; Transcription factor TCP8
TrEMBLI1MJW90.0I1MJW9_SOYBN; Uncharacterized protein
STRINGGLYMA16G00580.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60773050
Representative plantOGRP45911023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.14e-68TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]