PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G271900.1.p
Common NameGLYMA_15G271900, LOC100785696
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 457aa    MW: 50724.4 Da    PI: 6.5085
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G271900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.58.7e-12384429655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++Er RR ri +++ +L++l P +     k  s a++L +Ave+Ik+Lq
  Glyma.15G271900.1.p 384 SIAERERRTRISERIKKLQDLFPRS----EKPTSTADMLDLAVEHIKDLQ 429
                          689*********************8....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.98378428IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-14381444IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.42E-11382433No hitNo description
Gene3DG3DSA:4.10.280.104.2E-13383442IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-10384434IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-9384429IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MPFVPFKVIA KMSVMYSPVL NYSDVEYQLW KNQDMDSSIG HPQQHCHQSN SGLLRYCSAP  60
SSMLASLIDN TIHGCVNEEP FTSENQQQQQ HYLPSTSSEM ETMLSKMPPS NIGWSNSEPL  120
QEFGGKPVKQ EIGQSVPQGP PKQNGYSYGG SQLIYQSQQI QGLPNGSSIA SISAFDGSFG  180
AVNSMASEDS IQSKMGVRNC SNLFRQKSSP AGFFSIENDL AALREVGSFK DNDVSNGQAT  240
ASTSGLHSSL TFSSRSSSCL KQMPPQIAEN GNESLEENYD QSRNLVNDNG SSKCYIPSFT  300
NEFWESSAFN APKTENEDEI MFSTSNGLES QETDFSYQNH GLTHHLSLPS SSTKMSSIEM  360
FLQIQGSVPY KIRAKRGFAT HPRSIAERER RTRISERIKK LQDLFPRSEK PTSTADMLDL  420
AVEHIKDLQQ QVQILSDRKA KCKCTRNEKH YTRTCA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.226330.0flower| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2159410.0GU215941.1 Glycine max clone BAC GmWBb_74M16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006598252.20.0PREDICTED: transcription factor bHLH130 isoform X2
TrEMBLK7ME640.0K7ME64_SOYBN; Uncharacterized protein
STRINGGLYMA15G42680.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5111580
FabidsOGEF40053359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.12e-24bHLH family protein