PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G159100.1.p
Common NameGLYMA_15G159100, LOC100796977
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 133aa    MW: 14997.6 Da    PI: 4.7883
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G159100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.8e-191970256
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                         +y+GVr+++ +g++ AeIrdp++   + r +lg+f+taeeAa+a+++a+ +l+g+
  Glyma.15G159100.1.p 19 KYRGVRRRP-WGKFGAEIRDPTKS--TGRQWLGTFDTAEEAARAYDRAAIELRGA 70
                         8********.**********9773..3799**********************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.1311977IPR001471AP2/ERF domain
CDDcd000182.88E-311978No hitNo description
SuperFamilySSF541717.19E-231979IPR016177DNA-binding domain
PfamPF008471.2E-121969IPR001471AP2/ERF domain
SMARTSM003803.9E-331983IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.6E-311979IPR001471AP2/ERF domain
PRINTSPR003677.2E-112031IPR001471AP2/ERF domain
PRINTSPR003677.2E-114359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MEEAHKGEQD KEKGGEEVKY RGVRRRPWGK FGAEIRDPTK STGRQWLGTF DTAEEAARAY  60
DRAAIELRGA LAILNFPDEY YAHLPFVSSN PSISSNGSSY AAQQKEVIEF ECLDNKVLED  120
LLESEVKRRN ED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-29141179114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G159100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003546399.16e-94ethylene-responsive transcription factor ERF098
RefseqXP_028203151.16e-94ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC51e-40ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A0B2STZ71e-92A0A0B2STZ7_GLYSO; Ethylene-responsive transcription factor ERF098
TrEMBLI1MGW51e-92I1MGW5_SOYBN; Uncharacterized protein
STRINGGLYMA15G17090.12e-93(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.15e-30ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]