PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G141300.1.p
Common NameGLYMA_15G141300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 418aa    MW: 47767.2 Da    PI: 5.0247
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G141300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS163.71.6e-5014337734284
                 GRAS  34 dg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.......fsevsPilkfshltaNqaIleavegeervHii 115
                          +g +p++R+++yf+eAL+ r+ r + +    +++++ ++  s + l a k+       f+e  P+ ++s +t  q I e v++++++H+i
  Glyma.15G141300.1.p 143 AGtSPVRRIVHYFAEALRLRMDRATGR----VSCKDLQKGPSFDPLEAAKVlnptvvaFYEELPFCQISVFTEVQDIIEDVAEAKKIHVI 228
                          55479******************3333....334444433344444444444445568******************************** PP

                 GRAS 116 DfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEala 203
                          D++i++G+QW  L+qaL sR e p   l+iT++ + esg  +   e tgerL+++A+ ++ pf+fn+++++++  l+ + ++++p+E++a
  Glyma.15G141300.1.p 229 DLEIKKGGQWTILMQALESRHECPIeLLKITAITAVESGtTRYIAEDTGERLKDYAQGMNRPFSFNIVMVSDMLHLREDLFEIDPEETIA 318
                          *********************7665499*******999977778899******************************************* PP

                 GRAS 204 VnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                          V + +                      +++lsP v+vv+e ea+hns+sF++rf+eal ++sa+fd+le+ + re  er++
  Glyma.15G141300.1.p 319 VYSLV----------------------IRTLSPSVMVVAEIEANHNSTSFVNRFIEALFFFSAFFDCLETCMKREVAERNT 377
                          *8876......................899*****************************************9999888765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098521.15879417IPR005202Transcription factor GRAS
PfamPF035145.3E-48143377IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MEDLYHVSFT TDANFSSSND ILWCTEELNE LRKVQFSRAE DHGDYGGIDP LYSNFGFFPD  60
DPSTNHQKYH QQLQPSYHDY GKFDDNLQFD MPHSNSTTPL ASLEILNNYG KGFKRLRNDD  120
VAMATTNEGI WRKLSIEDVM RIAGTSPVRR IVHYFAEALR LRMDRATGRV SCKDLQKGPS  180
FDPLEAAKVL NPTVVAFYEE LPFCQISVFT EVQDIIEDVA EAKKIHVIDL EIKKGGQWTI  240
LMQALESRHE CPIELLKITA ITAVESGTTR YIAEDTGERL KDYAQGMNRP FSFNIVMVSD  300
MLHLREDLFE IDPEETIAVY SLVIRTLSPS VMVVAEIEAN HNSTSFVNRF IEALFFFSAF  360
FDCLETCMKR EVAERNTRNL KVDVWRAFLS RFGMNGHCLL IGWKGTPINS VSVWKFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-2314738539286GRAS family transcription factor containing p
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003534817.11e-157PREDICTED: DELLA protein RGL2-like
TrEMBLK7MBA50.0K7MBA5_SOYBN; Uncharacterized protein
STRINGGLYMA15G15105.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP2520734
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.13e-24RGA-like 2