PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G076200.1.p
Common NameGLYMA_15G076200, LOC100817597
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family SBP
Protein Properties Length: 139aa    MW: 16100.6 Da    PI: 6.8638
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G076200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP138.51.9e-4357133278
                          -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                  SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                          Cqv+gC+adlseak yhrrhkvCe h+kap+vl+ +++qrfCqqCsrfhelsefD++krsCrrrLa+hnerrrk+++
  Glyma.15G076200.1.p  57 CQVDGCSADLSEAKPYHRRHKVCEYHAKAPAVLIGDQHQRFCQQCSRFHELSEFDDSKRSCRRRLAGHNERRRKNAS 133
                          **************************************************************************875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0375752.0E-573138IPR017238Squamosa promoter-binding protein
Gene3DG3DSA:4.10.1100.101.6E-3650118IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.62454131IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.7E-3955135IPR004333Transcription factor, SBP-box
PfamPF031102.2E-3457130IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MDESWSEGKR SMSYKEEDEY EEEEEEEVSE YRDDGRKKKV VSSKRGSKAG GSVPPSCQVD  60
GCSADLSEAK PYHRRHKVCE YHAKAPAVLI GDQHQRFCQQ CSRFHELSEF DDSKRSCRRR  120
LAGHNERRRK NASEYHEL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A8e-3749130384squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G076200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150385e-77AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003547153.11e-96squamosa promoter-binding protein 1
RefseqXP_028203202.11e-96squamosa promoter-binding protein 1-like
SwissprotQ387412e-47SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBLA0A0B2QTJ63e-95A0A0B2QTJ6_GLYSO; Squamosa promoter-binding-like protein
TrEMBLI1MEK93e-95I1MEK9_SOYBN; Squamosa promoter-binding-like protein
STRINGGLYMA15G08270.14e-96(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53534153
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.13e-40squamosa promoter binding protein-like 3
Publications ? help Back to Top
  1. Klein J,Saedler H,Huijser P
    A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.
    Mol. Gen. Genet., 1996. 250(1): p. 7-16
    [PMID:8569690]