PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.15G024500.1.p
Common NameGLYMA_15G024500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 476aa    MW: 51227.4 Da    PI: 9.5491
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.15G024500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-057294123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         + C++C+k F r  nL+ H r H
  Glyma.15G024500.1.p 72 FICEICNKGFQRDQNLQLHRRGH 94
                         89*******************88 PP

2zf-C2H212.20.00055149171123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC +C+k +  +s+ k H +t+
  Glyma.15G024500.1.p 149 WKCDKCSKKYAVQSDWKAHSKTC 171
                          58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.2E-57194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.86E-77194No hitNo description
PROSITE profilePS5015710.8457294IPR007087Zinc finger, C2H2
PfamPF121715.6E-57294IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0227294IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
SMARTSM00355240114144IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.9E-4137170IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.86E-7144169No hitNo description
SMARTSM00355150149169IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MSNLTSASGE ASASSGNRTE IGTDYSQQYF APPLSQAQPP PLKKKRNLPG NPDPEAEVVA  60
LSPKTLLATN RFICEICNKG FQRDQNLQLH RRGHNLPWKL KQRSSNEIIR KKVYVCPEAS  120
CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKKYAV QSDWKAHSKT CGTREYRCDC  180
GTLFSRRDSF ITHRAFCDAL AEESSRSVTG IGIVANSTST QPTAAAASHQ QDIIHGNSNN  240
FSLKKEQQAG FRPPWIGQPS PSSASSFLVS HQENPNPRGG GPGPTLLPPY QTAPHMSATA  300
LLQKASQMGA TMSKTGSMIG THQQQAHVSA NAALNLSSRD HQMTPTLHGL VPFGNKAVPA  360
VGNGVSPSLL HHIIDSFSSP FEGTSFEDTF GGAGGDAMTK TTTADDGARG NNNEALTRDF  420
LGLRPLSHTD ILNIAGMGSC INSSQHNQTP NPWQGKVAET ANNVKGKGSY VLILN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-35145206364Zinc finger protein JACKDAW
5b3h_F4e-35145206364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198111KLKQRSSNEIIRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.610310.0cotyledon| hypocotyl| stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.15G024500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-146AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006597192.10.0protein indeterminate-domain 11
RefseqXP_025981581.10.0protein indeterminate-domain 11
RefseqXP_028204971.10.0protein indeterminate-domain 11
SwissprotQ8H1F51e-130IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLI1MCZ60.0I1MCZ6_SOYBN; Uncharacterized protein
STRINGGLYMA15G02840.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-106indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]