PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G094800.1.p
Common NameGLYMA_14G094800, LOC100780326
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 307aa    MW: 34349.6 Da    PI: 9.9482
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G094800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.29.4e-18170203134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          Cs C+t++TplWR gp g+k+LCnaCG+++rk +
  Glyma.14G094800.1.p 170 CSDCNTSTTPLWRTGPKGPKSLCNACGIRQRKAR 203
                          *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004017.4E-18164215IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.086164200IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.85E-12165204No hitNo description
Gene3DG3DSA:3.30.50.103.9E-15168203IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.13E-12169206No hitNo description
PROSITE patternPS003440170195IPR000679Zinc finger, GATA-type
PfamPF003201.2E-15170203IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MTPYSLNPPG PSIQAGQNQL FNISPNNQDC RTFFNIFDPR QTSIEIGGLR ENYRQDDKMI  60
LHDGSSSNCN SSFNISPETV VMVDPLSSAC DRRNLPSEEE SKNNDHGSGN KWMSSKMRLM  120
KKMMRPSISP TTDKAINSSP RFQNHQGLES RRYSQRSPRN NNGSSTPRVC SDCNTSTTPL  180
WRTGPKGPKS LCNACGIRQR KARRAMAEAA NGLVTPIACE KTRLHNKEKK SRMNHFAQFK  240
NKYKSTTTTT TTTVGSSEGV RKLEYFNNFA ISLRSNNSDF EQMFPRDEVA EAALLLMDLS  300
CGFVHL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.126330.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G094800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-79AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003545375.10.0putative GATA transcription factor 22
RefseqXP_028199200.10.0putative GATA transcription factor 22
TrEMBLK7M5W00.0K7M5W0_SOYBN; Uncharacterized protein
STRINGGLYMA14G10830.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19923484
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.14e-21cytokinin-responsive gata factor 1