PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G088200.1.p
Common NameGLYMA_14G088200, LOC100796966
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 172aa    MW: 19172.9 Da    PI: 8.0649
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G088200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26091.41.1e-282102196
               DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 
                          +C++C+vlr++C++ C+l+ ++      ++q++++ +++k+FG+s ++++++++pe++r+++++sl++e++ r+ +Pv+Gavg+++++++
  Glyma.14G088200.1.p   2 SCNGCRVLRKGCSDTCPLRSCLqwiesSESQRHATLFLAKFFGRSDLMSFISSVPETKRPALFQSLLFEGCGRTVNPVNGAVGLLWSGNW 91 
                          6*********************99987778899********************************************************* PP

               DUF260  86 qleqlkaelal 96 
                          +++q++++++l
  Glyma.14G088200.1.p  92 HVCQAAVQTVL 102
                          *****999876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.8141107IPR004883Lateral organ boundaries, LOB
PfamPF031952.7E-242101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSDTCPLR SCLQWIESSE SQRHATLFLA KFFGRSDLMS FISSVPETKR  60
PALFQSLLFE GCGRTVNPVN GAVGLLWSGN WHVCQAAVQT VLSGGVLRPL AETFTGDSDD  120
TRYHLRPLTL MHDVREMNDN SSLMNRVNRP QESEMASYDG HKKNQILNLF M*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.556440.0seed coat
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G088200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150364e-50AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003545336.11e-126LOB domain-containing protein 39 isoform X1
RefseqXP_028198303.11e-126LOB domain-containing protein 39-like isoform X1
SwissprotQ9SZE84e-64LBD39_ARATH; LOB domain-containing protein 39
TrEMBLA0A445H3L41e-125A0A445H3L4_GLYSO; LOB domain-containing protein 39 isoform A
TrEMBLK7M5P61e-125K7M5P6_SOYBN; Uncharacterized protein
STRINGGLYMA14G09750.21e-126(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37540.12e-66LOB domain-containing protein 39