PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.14G056200.1.p
Common NameGLYMA_14G056200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 394aa    MW: 43242.6 Da    PI: 4.6156
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.14G056200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.61.1e-1678128155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          + y+GVr++  +g+Wv eIr+p   + r  r +lg+f +a+eAa a+++a+++++g
  Glyma.14G056200.1.p  78 CNYRGVRQRT-WGKWVGEIREP---N-RgSRLWLGTFSSAQEAALAYDEAARAMYG 128
                          56*****999.**********8...3.35************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.02E-3178136No hitNo description
PfamPF008471.1E-1178128IPR001471AP2/ERF domain
SMARTSM003803.3E-3479143IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-2079136IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-3079136IPR001471AP2/ERF domain
PROSITE profilePS5103221.4379136IPR001471AP2/ERF domain
PRINTSPR003671.1E-98091IPR001471AP2/ERF domain
PRINTSPR003671.1E-9102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MGAYDQVSLK PLDSSRKRKS RSRGYGTGSV AETIAKWKEY NEHLYSGKDD SRTTRKAPAK  60
GSKKGCMKGK GGPQNSQCNY RGVRQRTWGK WVGEIREPNR GSRLWLGTFS SAQEAALAYD  120
EAARAMYGPC ARLNFPGITD YASFKESLKE SPMAASSSCS SAETATSDTT TTSNQSEVCA  180
AEDVKENPRL VNVNDKVNDC HKAYEAASPT SRMKQEPKDE AVDHMVPGAG KILDVRPEGT  240
HDAGQVAEDV NKDQMDLPWI DGFDFSDNYL NRFSTDELFQ VDELLGLIDN NPIDESALMQ  300
SLDFGQMGFP GDGNPQVDDT LSSFIYQLQN PDAKLLGSLP HMEQTPSGFD YGLDFLKTVE  360
PGDYNGGGEE PRFLNLDDDL NPDSKGMQAR KDD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1779136260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11419SRKRKS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.95530.0leaf| root| somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.14G056200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX4403870.0JX440387.1 Glycine max DRE-binding protein 2A;2 (DREB2A;2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001240942.20.0dehydration-responsive element-binding protein 2A2
TrEMBLA0A0R0G9U30.0A0A0R0G9U3_SOYBN; Uncharacterized protein
STRINGGLYMA14G06080.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.14e-43ERF family protein
Publications ? help Back to Top
  1. Mizoi J, et al.
    GmDREB2A;2, a canonical DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN2-type transcription factor in soybean, is posttranslationally regulated and mediates dehydration-responsive element-dependent gene expression.
    Plant Physiol., 2013. 161(1): p. 346-61
    [PMID:23151346]