PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G368700.1.p
Common NameGLYMA_13G368700, LOC100809888
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 285aa    MW: 32388.9 Da    PI: 4.9521
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G368700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.8e-13106151555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h ++Er+RR+++ ++f  L   +P +     kK +K++iL +A++Y+k+Lq
  Glyma.13G368700.1.p 106 HIMAERKRRQELTQKFIALSATIPGL-----KKTDKSSILGEAIDYVKQLQ 151
                          999***********************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.027101150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-16103168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.55E-10106154No hitNo description
PfamPF000102.6E-10106151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.5E-17106165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-13107156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MEQSWENWPL DMGMEEDRDL RDEEEFLRNI LSEPSESEMV TVGSAKRPPR TYILSFDNST  60
IIPATPEPTS RKRTRQPQNL NLEPIKPNPN TQPGKRGRSC SQTLDHIMAE RKRRQELTQK  120
FIALSATIPG LKKTDKSSIL GEAIDYVKQL QERVTELEQR NMRGKESMII LKKSEVCNSS  180
ETNSEDCCRA SEMLPDVEAR VMENEVLIEI HCEKEDGVEL KILDHLENLQ LCVTASSVLP  240
FGNSTLGITI IAQMGDAYKM KVNDLVPKLR QVLLNRMNVN TDPY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109114ERKRRQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.372360.0root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0985341e-123BT098534.1 Soybean clone JCVI-FLGm-12J15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006595181.10.0PREDICTED: transcription factor bHLH25-like
TrEMBLK7M4020.0K7M402_SOYBN; Uncharacterized protein
STRINGGLYMA13G44594.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6561573
FabidsOGEF131101230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.14e-46bHLH family protein