PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G368500.1.p
Common NameGLYMA_13G368500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 292aa    MW: 33061.1 Da    PI: 4.541
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G368500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.52.1e-12114159555
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h + Er+RR+++ s+f  L   +P +     kK++Ka +L++A++Y+k+Lq
  Glyma.13G368500.1.p 114 HIMSERNRRQELTSKFIALAATIPGL-----KKMDKAHVLREAINYVKQLQ 159
                          8899**********************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.615109158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-10114159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-15114170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.18E-10114163No hitNo description
SuperFamilySSF474594.58E-16114175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-13115164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MEENPWGSWS SNMEMDDEDV NESLRETNQF DEEFLRDILQ QPEEGGEDLK NSSIMSSLFP  60
TTYILSFDKS AAELLPTETD HRDYSSSQLP SSSNSRANHG TNKKPRSASE SLDHIMSERN  120
RRQELTSKFI ALAATIPGLK KMDKAHVLRE AINYVKQLQE RIEELEEDIR KNGVESAITI  180
IRSHLCIDDD SNTDEECYGP NEALPEVEAR VLGKEVLIKI YCGKQKGILL KIMSQLERLH  240
LYISTSNVLP FGNTLDITIT AQMGDKYNLV VNDLVKELRQ VAMMKSCDVQ Q*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.362390.0leaf| vegetative bud
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0937070.0BT093707.1 Soybean clone JCVI-FLGm-14A22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001242066.10.0uncharacterized protein LOC100795184
TrEMBLI1M5X60.0I1M5X6_SOYBN; Uncharacterized protein
STRINGGLYMA13G44570.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6561573
FabidsOGEF15398711
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.19e-49bHLH family protein