PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G349500.1.p
Common NameGLYMA_13G349500, LOC100819692
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 481aa    MW: 52482.7 Da    PI: 8.8324
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G349500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.22.9e-0592114123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C++C+k F r  nL+ H r H
  Glyma.13G349500.1.p  92 FICEICNKGFQRDQNLQLHRRGH 114
                          89*******************88 PP

2zf-C2H212.20.00056169191123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC +C+k +  +s+ k H +t+
  Glyma.13G349500.1.p 169 WKCDKCSKKYAVQSDWKAHSKTC 191
                          58*****************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.11E-791114No hitNo description
Gene3DG3DSA:3.30.160.601.3E-591114IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.02292114IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.84592114IPR007087Zinc finger, C2H2
PfamPF121715.7E-592114IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028094114IPR007087Zinc finger, C2H2
SMARTSM00355220134164IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.9E-4157190IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.11E-7164189No hitNo description
SMARTSM00355150169189IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MIIHKTPNMG KDDEGFDVPK TMSNLTSASG EARASSGNRT EIGTDYSQQY FTPPPTQTQP  60
PLKKKRNLPG NPDPEAEVVA LSPKTLLATN RFICEICNKG FQRDQNLQLH RRGHNLPWKL  120
KQRSSKDIIR KKVYVCPEPS CVHHEPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKKYAV  180
QSDWKAHSKT CGTREYRCDC GTLFSRRDSF ITHRAFCDAL AEESARSVTG IVANSTTQPT  240
EAAGVVISSS SLHQDMIHAS NNNFPLKKEQ QGCIPHWLGQ PSPSSASSSF LFSHQDHHLH  300
ENPNPRGGPT LLPPPYHQTA PHMSATALLQ KAAQMGATMS KTGSMIRTHQ QQAHVSANAA  360
LNLSSRDHQM NPTPHDLLPF GNNKAVDNGV GVSPSLLHHV INSFSSSPFE GTFEDTFGGG  420
DAMTADEGGG GGAGGNNNEG LTRDFLGLRH LSHTDILNIA GVGNCMNSSQ HNQTRNPWQG  480
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-35165226364Zinc finger protein JACKDAW
5b3h_F3e-35165226364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118131KLKQRSSKDIIRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.136260.0root| stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G349500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-146AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014621596.10.0protein indeterminate-domain 11
RefseqXP_028186906.10.0protein indeterminate-domain 11-like
SwissprotQ9LRW71e-141IDD11_ARATH; Protein indeterminate-domain 11
TrEMBLA0A445IEL60.0A0A445IEL6_GLYSO; Protein indeterminate-domain 11 isoform A
TrEMBLI1M5B50.0I1M5B5_SOYBN; Uncharacterized protein
STRINGGLYMA13G42550.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13810.11e-118indeterminate(ID)-domain 11
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]