PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G334900.1.p
Common NameGLYMA_13G334900, LOC100786177
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WOX
Protein Properties Length: 213aa    MW: 24109.1 Da    PI: 8.9106
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G334900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.19.4e-212079357
                         --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         +R+++tkeq++ Le+l+++  r+ps+e++++++++l    +++ ++V++WFqN++a++++
  Glyma.13G334900.1.p 20 SRWSPTKEQIDMLENLYKQgIRTPSTEQIQQITSRLraygHIEGKNVFYWFQNHKARQRQ 79
                         6*****************99**************************************97 PP

2Wus_type_Homeobox114.64.7e-371980364
    Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                          +RW+Pt+eQi +Le+lyk+G+rtP++e+iq+it++L++yG+ie+kNVfyWFQN+kaR+rqk
  Glyma.13G334900.1.p 19 VSRWSPTKEQIDMLENLYKQGIRTPSTEQIQQITSRLRAYGHIEGKNVFYWFQNHKARQRQK 80
                         68***********************************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007111.3531580IPR001356Homeobox domain
SMARTSM003898.6E-61784IPR001356Homeobox domain
SuperFamilySSF466898.55E-121984IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.0E-92079IPR009057Homeodomain-like
PfamPF000461.7E-182079IPR001356Homeobox domain
CDDcd000863.90E-62180No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MESHSSDAEA ENVRTHSSVS RWSPTKEQID MLENLYKQGI RTPSTEQIQQ ITSRLRAYGH  60
IEGKNVFYWF QNHKARQRQK LMKQQTIAYS NRFLRASHPI CQNVACAPYC LQRSGFSFYP  120
QQSKVLASGG ISSTGPLGMQ RMFDGMQSSE HPDCNREVLT LFPLHPTGIL KEKTTHQVPS  180
LASTSVVAVD EDGHLGNQPF FNFFTTEPRS RE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.394361e-134somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the egg cell and the central cell of the embryo sac, but not in the synergids, the antipodals or the male gametophyte. After fertilization, it is expressed in the zygote. After the first division of the zygote, it is detected exclusively in the apical daughter cell, while WOX8 is expressed in the basal daughter cell. Subsequently, it is expressed in all cells of the 4-cell embryo proper and predominantly in the apical domain of the 8-cell embryo. However, in some 8-cell embryos it is also weakly expressed in the central domain suggesting that expression shifts to the most apical cells during this stage. Expression remains restricted to the apical domain in the 16-cell embryo and the early-globular stage. Not expressed in the apical domain thereafter. However, in heart stage embryos it is weakly expressed in a ring of epidermal cells approximately at the junction of hypocotyl and root. Not expressed in mature embryos, endosperm or postembryonically in inflorescences. {ECO:0000269|PubMed:14711878}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in embryonic patterning. Required for apical embryo development after fertilization. Its specific localization to the apical daughter cell of the zygote, while WOX8 is confined to the basal cell, suggests that the asymmetric division of the plant zygote separates determinants of apical and basal cell fates. {ECO:0000269|PubMed:14711878}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G334900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0965101e-132BT096510.1 Soybean clone JCVI-FLGm-15H19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003542024.31e-160WUSCHEL-related homeobox 2
SwissprotQ6X7K17e-43WOX2_ARATH; WUSCHEL-related homeobox 2
TrEMBLI1M4V51e-159I1M4V5_SOYBN; Uncharacterized protein
STRINGGLYMA13G41000.11e-160(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82563044
Representative plantOGRP85821116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.13e-45WUSCHEL related homeobox 2
Publications ? help Back to Top
  1. Liang Z,Brown RC,Fletcher JC,Opsahl-Sorteberg HG
    Calpain-Mediated Positional Information Directs Cell Wall Orientation to Sustain Plant Stem Cell Activity, Growth and Development.
    Plant Cell Physiol., 2015. 56(9): p. 1855-66
    [PMID:26220906]
  2. Zhu T,Moschou PN,Alvarez JM,Sohlberg JJ,von Arnold S
    WUSCHEL-RELATED HOMEOBOX 2 is important for protoderm and suspensor development in the gymnosperm Norway spruce.
    BMC Plant Biol., 2016. 16: p. 19
    [PMID:26786587]
  3. Zhang Z,Tucker E,Hermann M,Laux T
    A Molecular Framework for the Embryonic Initiation of Shoot Meristem Stem Cells.
    Dev. Cell, 2017. 40(3): p. 264-277.e4
    [PMID:28171749]